Literature DB >> 23286322

Multidimensional magic angle spinning NMR spectroscopy for site-resolved measurement of proton chemical shift anisotropy in biological solids.

Guangjin Hou1, Sivakumar Paramasivam, Si Yan, Tatyana Polenova, Alexander J Vega.   

Abstract

The proton chemical shift (CS) tensor is a sensitive probe of structure and hydrogen bonding. Highly accurate quantum-chemical protocols exist for computation of (1)H magnetic shieldings in the various contexts, making proton chemical shifts potentially a powerful predictor of structural and electronic properties. However, (1)H CS tensors are not yet widely used in protein structure calculation due to scarcity of experimental data. While isotropic proton shifts can be readily measured in proteins even in the solid state, determination of the (1)H chemical shift anisotropy (CSA) tensors remains challenging, particularly in molecules containing multiple proton sites. We present a method for site-resolved measurement of amide proton CSAs in fully protonated solids under magic angle spinning. The approach consists of three concomitant 3D experiments yielding spectra determined by either mainly (1)H CSA, mainly (1)H–(15)N dipolar, or combined (1)H CSA and (1)H–(15)N dipolar interactions. The anisotropic interactions are recoupled using RN-sequences of appropriate symmetry, such as R12(1)(4), and (15)N/(13)C isotropic CS dimensions are introduced via a short selective (1)H–(15)N cross-polarization step. Accurate (1)H chemical shift tensor parameters are extracted by simultaneous fit of the lineshapes recorded in the three spectra. An application of this method is presented for an 89-residue protein, U-(13)C,(15)N-CAP-Gly domain of dynactin. The CSA parameters determined from the triple fits correlate with the hydrogen-bonding distances, and the trends are in excellent agreement with the prior solution NMR results. This approach is generally suited for recording proton CSA parameters in various biological and organic systems, including protein assemblies and nucleic acids.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23286322      PMCID: PMC3586542          DOI: 10.1021/ja3084972

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

1.  Measurements of motionally averaged heteronuclear dipolar couplings in MAS NMR using R-type recoupling.

Authors:  Sergey V Dvinskikh; Herbert Zimmermann; Arnold Maliniak; Dick Sandström
Journal:  J Magn Reson       Date:  2004-06       Impact factor: 2.229

2.  Cooperative hydrogen bonding effects are key determinants of backbone amide proton chemical shifts in proteins.

Authors:  Laura L Parker; Andrew R Houk; Jan H Jensen
Journal:  J Am Chem Soc       Date:  2006-08-02       Impact factor: 15.419

3.  Symmetry-based recoupling of proton chemical shift anisotropies in ultrahigh-field solid-state NMR.

Authors:  Darren H Brouwer; John A Ripmeester
Journal:  J Magn Reson       Date:  2006-12-26       Impact factor: 2.229

4.  Intra- and intermolecular effects on 1H chemical shifts in a silk model Peptide determined by high-field solid state 1H NMR and empirical calculations.

Authors:  Yu Suzuki; Rui Takahashi; Tadashi Shimizu; Masataka Tansho; Kazuo Yamauchi; Mike P Williamson; Tetsuo Asakura
Journal:  J Phys Chem B       Date:  2009-07-23       Impact factor: 2.991

5.  Solid-state and solution NMR studies of the CAP-Gly domain of mammalian dynactin and its interaction with microtubules.

Authors:  Shangjin Sun; Amanda Siglin; John C Williams; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

6.  Proton chemical shift anisotropy measurements of hydrogen-bonded functional groups by fast magic-angle spinning solid-state NMR spectroscopy.

Authors:  Luminita Duma; Daniel Abergel; Piotr Tekely; Geoffrey Bodenhausen
Journal:  Chem Commun (Camb)       Date:  2008-03-18       Impact factor: 6.222

7.  Determination of relative tensor orientations by γ-encoded chemical shift anisotropy/heteronuclear dipolar coupling 3D NMR spectroscopy in biological solids.

Authors:  Guangjin Hou; Sivakumar Paramasivam; In-Ja L Byeon; Angela M Gronenborn; Tatyana Polenova
Journal:  Phys Chem Chem Phys       Date:  2010-10-08       Impact factor: 3.676

8.  Disease-associated mutations in the p150(Glued) subunit destabilize the CAP-gly domain.

Authors:  Shubbir Ahmed; Shangjin Sun; Amanda E Siglin; Tatyana Polenova; John C Williams
Journal:  Biochemistry       Date:  2010-06-29       Impact factor: 3.162

9.  Solid-state NMR studies of HIV-1 capsid protein assemblies.

Authors:  Yun Han; Jinwoo Ahn; Jason Concel; In-Ja L Byeon; Angela M Gronenborn; Jun Yang; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

10.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

View more
  22 in total

1.  Expanding the horizons for structural analysis of fully protonated protein assemblies by NMR spectroscopy at MAS frequencies above 100 kHz.

Authors:  Jochem Struppe; Caitlin M Quinn; Manman Lu; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Jodi Kraus; Loren B Andreas; Jan Stanek; Daniela Lalli; Anne Lesage; Guido Pintacuda; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Solid State Nucl Magn Reson       Date:  2017-07-03       Impact factor: 2.293

2.  Internal dynamics of dynactin CAP-Gly is regulated by microtubules and plus end tracking protein EB1.

Authors:  Si Yan; Huilan Zhang; Guangjin Hou; Shubbir Ahmed; John C Williams; Tatyana Polenova
Journal:  J Biol Chem       Date:  2014-12-01       Impact factor: 5.157

Review 3.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

4.  Assignment of oriented sample NMR resonances from a three transmembrane helix protein.

Authors:  D T Murray; I Hung; T A Cross
Journal:  J Magn Reson       Date:  2014-01-21       Impact factor: 2.229

5.  Backbone amide 15N chemical shift tensors report on hydrogen bonding interactions in proteins: A magic angle spinning NMR study.

Authors:  Sivakumar Paramasivam; Angela M Gronenborn; Tatyana Polenova
Journal:  Solid State Nucl Magn Reson       Date:  2018-03-15       Impact factor: 2.293

6.  HIV-1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD.

Authors:  Huilan Zhang; Guangjin Hou; Manman Lu; Jinwoo Ahn; In-Ja L Byeon; Christopher J Langmead; Juan R Perilla; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William W Brey; David A Case; Klaus Schulten; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2016-10-18       Impact factor: 15.419

7.  Composite-180° pulse-based symmetry sequences to recouple proton chemical shift anisotropy tensors under ultrafast MAS solid-state NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Michal Malon; Ayyalusamy Ramamoorthy; Yusuke Nishiyama
Journal:  J Magn Reson       Date:  2014-11-18       Impact factor: 2.229

Review 8.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

9.  A Magic-Angle Spinning NMR Method for the Site-Specific Measurement of Proton Chemical-Shift Anisotropy in Biological and Organic Solids.

Authors:  Guangjin Hou; Rupal Gupta; Tatyana Polenova; Alexander J Vega
Journal:  Isr J Chem       Date:  2014-02-01       Impact factor: 3.333

10.  Improving dipolar recoupling for site-specific structural and dynamics studies in biosolids NMR: windowed RN-symmetry sequences.

Authors:  Xingyu Lu; Huilan Zhang; Manman Lu; Alexander J Vega; Guangjin Hou; Tatyana Polenova
Journal:  Phys Chem Chem Phys       Date:  2016-01-18       Impact factor: 3.676

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.