Literature DB >> 29579703

Backbone amide 15N chemical shift tensors report on hydrogen bonding interactions in proteins: A magic angle spinning NMR study.

Sivakumar Paramasivam1, Angela M Gronenborn2, Tatyana Polenova3.   

Abstract

Chemical shift tensors (CSTs) are an exquisite probe of local geometric and electronic structure. 15N CST are very sensitive to hydrogen bonding, yet they have been reported for very few proteins to date. Here we present experimental results and statistical analysis of backbone amide 15N CSTs for 100 residues of four proteins, two E. coli thioredoxin reassemblies (1-73-(U-13C,15N)/74-108-(U-15N) and 1-73-(U-15N)/74-108-(U-13C,15N)), dynein light chain 8 LC8, and CAP-Gly domain of the mammalian dynactin. The 15N CSTs were measured by a symmetry-based CSA recoupling method, ROCSA. Our results show that the principal component δ11 is very sensitive to the presence of hydrogen bonding interactions due to its unique orientation in the molecular frame. The downfield chemical shift change of backbone amide nitrogen nuclei with increasing hydrogen bond strength is manifested in the negative correlation of the principal components with hydrogen bond distance for both α-helical and β-sheet secondary structure elements. Our findings highlight the potential for the use of 15N CSTs in protein structure refinement.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Chemical shift tensor; Hydrogen bonding; Magic-angle spinning NMR; Proteins

Mesh:

Substances:

Year:  2018        PMID: 29579703      PMCID: PMC6261280          DOI: 10.1016/j.ssnmr.2018.03.002

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  21 in total

1.  Orientation of amide-nitrogen-15 chemical shift tensors in peptides: a quantum chemical study.

Authors:  J R Brender; D M Taylor; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

2.  Magic angle spinning solid-state NMR spectroscopy for structural studies of protein interfaces. resonance assignments of differentially enriched Escherichia coli thioredoxin reassembled by fragment complementation.

Authors:  Dabeiba Marulanda; Maria Luisa Tasayco; Ann McDermott; Marcela Cataldi; Vilma Arriaran; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

3.  Structural and thermodynamic characterization of a cytoplasmic dynein light chain-intermediate chain complex.

Authors:  John C Williams; Petra L Roulhac; Anindya G Roy; Richard B Vallee; Michael C Fitzgerald; Wayne A Hendrickson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-05       Impact factor: 11.205

4.  Magic angle spinning NMR spectroscopy of thioredoxin reassemblies.

Authors:  Jun Yang; Sivakumar Paramasivam; Dabeiba Marulanda; Marcela Cataldi; Maria Luisa Tasayco; Tatyana Polenova
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

Review 5.  Hydrogen bonding in globular proteins.

Authors:  E N Baker; R E Hubbard
Journal:  Prog Biophys Mol Biol       Date:  1984       Impact factor: 3.667

6.  Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution.

Authors:  S K Katti; D M LeMaster; H Eklund
Journal:  J Mol Biol       Date:  1990-03-05       Impact factor: 5.469

7.  Resonance Assignments and Secondary Structure Analysis of Dynein Light Chain 8 by Magic Angle Spinning NMR Spectroscopy.

Authors:  Shangjin Sun; Andrew H Butterworth; Sivakumar Paramasivam; Si Yan; Christine M Lightcap; John C Williams; Tatyana Polenova
Journal:  Can J Chem       Date:  2011-08-04       Impact factor: 1.118

8.  How Does an Amide-N Chemical Shift Tensor Vary in Peptides?

Authors:  Alan Poon; Jeff Birn; A Ramamoorthy
Journal:  J Phys Chem B       Date:  2004-10-21       Impact factor: 2.991

9.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

10.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

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  1 in total

1.  Accurate Backbone 13 C and 15 N Chemical Shift Tensors in Galectin-3 Determined by MAS NMR and QM/MM: Details of Structure and Environment Matter.

Authors:  Jodi Kraus; Rupal Gupta; Manman Lu; Angela M Gronenborn; Mikael Akke; Tatyana Polenova
Journal:  Chemphyschem       Date:  2020-06-04       Impact factor: 3.102

  1 in total

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