Literature DB >> 23284519

1-Allyl-1H-1,3-benzimidazol-2(3H)-one.

Dounia Belaziz1, Youssef Kandri Rodi, Fouad Ouazzani Chahdi, El Mokhtar Essassi, Mohamed Saadi, Lahcen El Ammari.   

Abstract

The fused five- and six-membered rings in the title compound, C(10)H(10)N(2)O, are approximately coplanar, with an r.m.s. deviation of 0.008 Å. The mean plane of the allyl group is roughly perpendicular to the mean plane of the 1,3-benzimidazol-2(3H)-one system, making a dihedral angle of 86.1 (2)°. In the crystal, each mol-ecule is linked to its symmetry equivalent partner by a pair of N-H⋯O and C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 23284519      PMCID: PMC3515299          DOI: 10.1107/S1600536812043620

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological and biochemical properties of the title compound, see: Gravatt et al. (1994 ▶); Horton et al. (2003 ▶); Kim et al. (1996 ▶); Roth et al. (1997 ▶). For compounds with similar structures, see: Belaziz et al. (2012 ▶); Ouzidan et al. (2011 ▶).

Experimental

Crystal data

C10H10N2O M = 174.20 Monoclinic, a = 10.2749 (5) Å b = 5.5787 (3) Å c = 16.6220 (9) Å β = 100.976 (4)° V = 935.35 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.38 × 0.29 × 0.27 mm

Data collection

Bruker X8 APEX diffractometer 13429 measured reflections 2570 independent reflections 1393 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.128 S = 1.04 2570 reflections 120 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812043620/fj2602sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043620/fj2602Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043620/fj2602Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N2OF(000) = 368
Mr = 174.20Dx = 1.237 Mg m3
Monoclinic, P21/cMelting point: 342.7 K
Hall symbol: -p 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.2749 (5) ÅCell parameters from 2570 reflections
b = 5.5787 (3) Åθ = 2.9–29.4°
c = 16.6220 (9) ŵ = 0.08 mm1
β = 100.976 (4)°T = 296 K
V = 935.35 (8) Å3Block, colourless
Z = 40.38 × 0.29 × 0.27 mm
Bruker X8 APEX diffractometer1393 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.046
Graphite monochromatorθmax = 29.4°, θmin = 2.9°
φ and ω scansh = −13→14
13429 measured reflectionsk = −7→7
2570 independent reflectionsl = −22→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0584P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2570 reflectionsΔρmax = 0.14 e Å3
120 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.011 (4)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.64101 (14)0.3295 (2)0.87918 (9)0.0444 (4)
C20.63854 (16)0.3098 (3)0.79675 (9)0.0549 (4)
H2A0.59370.18510.76620.066*
C30.70534 (18)0.4825 (3)0.76048 (9)0.0638 (5)
H30.70560.47320.70460.077*
C40.77162 (19)0.6684 (3)0.80584 (10)0.0651 (5)
H40.81530.78200.77980.078*
C50.77454 (16)0.6892 (2)0.88889 (10)0.0557 (4)
H50.81890.81490.91910.067*
C60.70925 (14)0.5166 (2)0.92520 (8)0.0436 (4)
C70.74323 (15)0.6384 (2)1.07492 (9)0.0512 (4)
H7A0.70200.59281.12050.061*
H7B0.71800.80271.06050.061*
C80.88971 (17)0.6264 (3)1.10148 (10)0.0656 (5)
H80.91910.46021.11440.105 (7)*
C90.9688 (2)0.8074 (4)1.11471 (13)0.0968 (7)
H9A1.07140.79451.13460.116*
H9B0.92560.97021.10480.116*
C100.61611 (15)0.2860 (2)1.01062 (9)0.0441 (4)
N10.69312 (11)0.48505 (18)1.00561 (7)0.0452 (3)
N20.58638 (12)0.19162 (19)0.93391 (7)0.0481 (3)
H20.54010.06400.92100.058*
O10.58255 (11)0.21105 (17)1.07330 (6)0.0559 (3)
U11U22U33U12U13U23
C10.0415 (9)0.0445 (7)0.0468 (9)0.0002 (5)0.0072 (7)0.0025 (6)
C20.0578 (11)0.0578 (9)0.0476 (10)−0.0040 (7)0.0064 (8)−0.0033 (6)
C30.0733 (13)0.0750 (11)0.0442 (9)−0.0033 (8)0.0137 (8)0.0056 (7)
C40.0751 (13)0.0680 (11)0.0555 (11)−0.0120 (8)0.0205 (9)0.0106 (8)
C50.0597 (11)0.0523 (9)0.0567 (10)−0.0101 (7)0.0149 (8)0.0027 (6)
C60.0417 (9)0.0443 (7)0.0451 (8)0.0006 (6)0.0091 (6)0.0028 (5)
C70.0556 (11)0.0511 (8)0.0483 (9)−0.0034 (6)0.0132 (8)−0.0068 (6)
C80.0591 (12)0.0633 (11)0.0695 (12)−0.0024 (8)0.0001 (9)−0.0102 (8)
C90.0674 (15)0.0902 (15)0.130 (2)−0.0206 (10)0.0128 (13)−0.0189 (12)
C100.0420 (9)0.0437 (7)0.0469 (9)0.0000 (6)0.0090 (7)0.0037 (6)
N10.0476 (8)0.0444 (6)0.0442 (7)−0.0063 (5)0.0106 (6)−0.0014 (4)
N20.0514 (8)0.0439 (6)0.0491 (8)−0.0094 (5)0.0100 (6)−0.0008 (5)
O10.0631 (8)0.0575 (6)0.0491 (7)−0.0111 (5)0.0159 (6)0.0066 (4)
C1—C21.370 (2)C7—N11.4487 (17)
C1—N21.3890 (17)C7—C81.487 (2)
C1—C61.4007 (18)C7—H7A0.9700
C2—C31.386 (2)C7—H7B0.9700
C2—H2A0.9300C8—C91.288 (2)
C3—C41.383 (2)C8—H80.9858
C3—H30.9300C9—H9A1.0463
C4—C51.380 (2)C9—H9B1.0104
C4—H40.9300C10—O11.2313 (16)
C5—C61.3768 (19)C10—N21.3594 (17)
C5—H50.9300C10—N11.3751 (17)
C6—N11.3890 (16)N2—H20.8600
C2—C1—N2132.67 (13)C8—C7—H7A108.9
C2—C1—C6121.20 (13)N1—C7—H7B108.9
N2—C1—C6106.13 (12)C8—C7—H7B108.9
C1—C2—C3117.58 (14)H7A—C7—H7B107.7
C1—C2—H2A121.2C9—C8—C7125.79 (19)
C3—C2—H2A121.2C9—C8—H8122.9
C4—C3—C2121.15 (15)C7—C8—H8111.0
C4—C3—H3119.4C8—C9—H9A124.4
C2—C3—H3119.4C8—C9—H9B115.7
C5—C4—C3121.56 (14)H9A—C9—H9B119.9
C5—C4—H4119.2O1—C10—N2127.79 (13)
C3—C4—H4119.2O1—C10—N1125.63 (13)
C6—C5—C4117.39 (14)N2—C10—N1106.57 (12)
C6—C5—H5121.3C10—N1—C6109.64 (11)
C4—C5—H5121.3C10—N1—C7123.39 (12)
C5—C6—N1131.91 (13)C6—N1—C7126.93 (11)
C5—C6—C1121.11 (13)C10—N2—C1110.67 (12)
N1—C6—C1106.97 (11)C10—N2—H2124.7
N1—C7—C8113.31 (12)C1—N2—H2124.7
N1—C7—H7A108.9
N2—C1—C2—C3−179.87 (15)N2—C10—N1—C61.06 (15)
C6—C1—C2—C3−0.4 (2)O1—C10—N1—C7−1.5 (2)
C1—C2—C3—C4−0.2 (3)N2—C10—N1—C7178.85 (12)
C2—C3—C4—C50.3 (3)C5—C6—N1—C10178.59 (15)
C3—C4—C5—C60.3 (3)C1—C6—N1—C10−0.59 (15)
C4—C5—C6—N1179.99 (14)C5—C6—N1—C70.9 (2)
C4—C5—C6—C1−0.9 (2)C1—C6—N1—C7−178.28 (13)
C2—C1—C6—C51.0 (2)C8—C7—N1—C10112.16 (16)
N2—C1—C6—C5−179.39 (13)C8—C7—N1—C6−70.44 (18)
C2—C1—C6—N1−179.73 (12)O1—C10—N2—C1179.19 (14)
N2—C1—C6—N1−0.11 (15)N1—C10—N2—C1−1.14 (15)
N1—C7—C8—C9130.56 (19)C2—C1—N2—C10−179.66 (15)
O1—C10—N1—C6−179.26 (13)C6—C1—N2—C100.79 (16)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.862.002.8274 (14)161
C3—H3···O1ii0.932.523.3080 (19)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯O1i 0.862.002.8274 (14)161
C3—H3⋯O1ii 0.932.523.3080 (19)142

Symmetry codes: (i) ; (ii) .

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