Literature DB >> 24427099

1-Allyl-3-benzyl-1H-benzimidazol-2(3H)-one.

Youssef Kandri Rodi1, Amal Haoudi1, Frédéric Capet2, Ahmed Mazzah3, El Mokhtar Essassi4, Lahcen El Ammari5.   

Abstract

In the title compound, C17H16N2O, the fused n class="Chemical">benzimidazol-2(3H)-one system is essentially planar, the largest deviation from the mean plane being 0.006 (2) Å for the carbonyl C atom. Its mean plane is almost perpendicular to the benzyl plane and to the allyl group, making dihedral angles of 80.6 (1) and 77.4 (3)°, respectively. The benzyl group and the allyl subsituent lie on opposite sides of the fused ring system. In the crystal, mol-ecules are linked by bifurcated C-H⋯O hydrogen bonds in which the carbonyl O atom acts as accepter to two aromatic C-H groups, forming a two-dimensional network parallel to (001).

Entities:  

Year:  2013        PMID: 24427099      PMCID: PMC3884391          DOI: 10.1107/S1600536813023568

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of benzimidazole derivatives, see: Gravatt et al. (1994 ▶); Soderlind et al. (1999 ▶); Bouwman et al. (1990 ▶) and for potential applications in the treatment of some diseases, see: Zhu et al. (2008 ▶); Ogino et al. (2008 ▶); Shah et al. (2008 ▶). For their use as inter­mediates in chemical synthesis, see: Bai et al. (2001 ▶). For similar compounds, see: Belaziz et al. (2012 ▶, 2013 ▶).

Experimental

Crystal data

C17H16N2O M = 264.32 Triclinic, a = 9.0667 (2) Å b = 9.3922 (2) Å c = 9.6486 (2) Å α = 94.218 (1)° β = 113.543 (1)° γ = 106.265 (1)° V = 706.87 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.43 × 0.20 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.967, T max = 0.988 12670 measured reflections 3494 independent reflections 2573 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.141 S = 1.06 3494 reflections 181 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT-Plus (Bruker, 2009 ▶); data reduction: SAIn class="Chemical">NT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813023568/im2438sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023568/im2438Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813023568/im2438Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N2OZ = 2
Mr = 264.32F(000) = 280
Triclinic, P1Dx = 1.242 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.0667 (2) ÅCell parameters from 3494 reflections
b = 9.3922 (2) Åθ = 2.3–28.3°
c = 9.6486 (2) ŵ = 0.08 mm1
α = 94.218 (1)°T = 296 K
β = 113.543 (1)°Irregular shape, colourless
γ = 106.265 (1)°0.43 × 0.20 × 0.16 mm
V = 706.87 (3) Å3
Bruker APEXII CCD diffractometer3494 independent reflections
Radiation source: microfocus source2573 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
φ and ω scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.967, Tmax = 0.988k = −12→12
12670 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0617P)2 + 0.1232P] where P = (Fo2 + 2Fc2)/3
3494 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.08458 (17)0.53012 (15)0.75007 (15)0.0503 (3)
C2−0.0580 (2)0.4975 (2)0.77755 (18)0.0652 (4)
H2−0.08000.42350.83250.078*
C3−0.1663 (2)0.5780 (2)0.7211 (2)0.0785 (5)
H3−0.26380.55750.73760.094*
C4−0.1336 (2)0.6887 (2)0.6404 (2)0.0778 (5)
H4−0.20980.74100.60340.093*
C50.0111 (2)0.72378 (18)0.61297 (19)0.0636 (4)
H50.03380.79890.55940.076*
C60.11833 (17)0.64210 (14)0.66878 (15)0.0484 (3)
C70.33127 (18)0.54248 (15)0.73733 (17)0.0524 (3)
C80.2415 (2)0.35712 (18)0.88407 (19)0.0710 (5)
H8A0.22680.38450.97550.085*
H8B0.35820.35880.91810.085*
C90.1241 (3)0.20112 (19)0.8030 (2)0.0777 (5)
H90.12570.16090.71280.093*
C100.0209 (3)0.1174 (3)0.8466 (4)0.1171 (9)
H10A0.01540.15350.93620.141*
H10B−0.04900.02010.78890.141*
C110.3572 (2)0.74859 (15)0.59174 (18)0.0576 (4)
H11A0.27510.75080.49040.069*
H11B0.44010.70990.57780.069*
C120.44798 (18)0.90823 (15)0.68814 (16)0.0507 (3)
C130.4105 (2)1.02876 (17)0.6275 (2)0.0635 (4)
H130.32851.01180.52610.076*
C140.4935 (3)1.17505 (18)0.7159 (3)0.0762 (5)
H140.46711.25570.67380.091*
C150.6135 (3)1.2009 (2)0.8642 (3)0.0798 (6)
H150.66861.29910.92360.096*
C160.6534 (3)1.0830 (2)0.9259 (2)0.0854 (6)
H160.73601.10111.02730.102*
C170.5712 (2)0.93636 (19)0.8379 (2)0.0709 (5)
H170.59940.85650.88030.085*
N10.21567 (15)0.47062 (13)0.79022 (14)0.0546 (3)
N20.26911 (15)0.64676 (12)0.66155 (14)0.0504 (3)
O10.46264 (14)0.51931 (12)0.75495 (15)0.0703 (3)
U11U22U33U12U13U23
C10.0468 (7)0.0456 (7)0.0449 (7)0.0041 (6)0.0168 (6)−0.0037 (5)
C20.0565 (9)0.0695 (10)0.0581 (9)0.0033 (7)0.0286 (7)−0.0032 (7)
C30.0530 (9)0.0892 (13)0.0808 (12)0.0110 (9)0.0317 (9)−0.0143 (10)
C40.0553 (10)0.0799 (12)0.0836 (12)0.0281 (9)0.0168 (9)−0.0067 (10)
C50.0600 (9)0.0563 (9)0.0633 (9)0.0209 (7)0.0168 (7)0.0043 (7)
C60.0462 (7)0.0418 (6)0.0467 (7)0.0087 (5)0.0164 (6)−0.0024 (5)
C70.0488 (8)0.0387 (6)0.0586 (8)0.0074 (6)0.0193 (6)0.0016 (6)
C80.0755 (11)0.0578 (9)0.0593 (9)0.0110 (8)0.0165 (8)0.0192 (7)
C90.0935 (13)0.0534 (9)0.0736 (11)0.0171 (9)0.0287 (10)0.0196 (8)
C100.120 (2)0.0697 (13)0.162 (2)0.0150 (13)0.0698 (18)0.0428 (15)
C110.0682 (9)0.0451 (7)0.0594 (8)0.0098 (7)0.0352 (7)0.0057 (6)
C120.0544 (8)0.0424 (7)0.0567 (8)0.0078 (6)0.0322 (7)0.0066 (6)
C130.0704 (10)0.0526 (8)0.0670 (9)0.0180 (7)0.0316 (8)0.0126 (7)
C140.0904 (13)0.0455 (8)0.1024 (15)0.0198 (8)0.0541 (12)0.0139 (9)
C150.0848 (13)0.0490 (9)0.0948 (14)−0.0039 (8)0.0512 (11)−0.0105 (9)
C160.0789 (12)0.0732 (12)0.0676 (11)−0.0026 (9)0.0191 (9)−0.0043 (9)
C170.0726 (11)0.0556 (9)0.0693 (10)0.0109 (8)0.0237 (9)0.0128 (8)
N10.0539 (7)0.0447 (6)0.0559 (7)0.0095 (5)0.0199 (5)0.0109 (5)
N20.0508 (6)0.0381 (5)0.0604 (7)0.0103 (5)0.0262 (5)0.0074 (5)
O10.0533 (6)0.0580 (6)0.0960 (9)0.0210 (5)0.0287 (6)0.0116 (6)
C1—C21.378 (2)C9—C101.274 (3)
C1—N11.3824 (19)C9—H90.9300
C1—C61.396 (2)C10—H10A0.9300
C2—C31.371 (3)C10—H10B0.9300
C2—H20.9300C11—N21.4503 (18)
C3—C41.381 (3)C11—C121.5109 (19)
C3—H30.9300C11—H11A0.9700
C4—C51.396 (3)C11—H11B0.9700
C4—H40.9300C12—C131.376 (2)
C5—C61.373 (2)C12—C171.377 (2)
C5—H50.9300C13—C141.385 (2)
C6—N21.3853 (18)C13—H130.9300
C7—O11.2181 (17)C14—C151.359 (3)
C7—N11.3771 (19)C14—H140.9300
C7—N21.3773 (18)C15—C161.364 (3)
C8—N11.4572 (19)C15—H150.9300
C8—C91.478 (2)C16—C171.386 (2)
C8—H8A0.9700C16—H160.9300
C8—H8B0.9700C17—H170.9300
C2—C1—N1131.78 (15)H10A—C10—H10B120.0
C2—C1—C6121.12 (15)N2—C11—C12112.61 (11)
N1—C1—C6107.10 (12)N2—C11—H11A109.1
C3—C2—C1117.73 (17)C12—C11—H11A109.1
C3—C2—H2121.1N2—C11—H11B109.1
C1—C2—H2121.1C12—C11—H11B109.1
C2—C3—C4121.36 (17)H11A—C11—H11B107.8
C2—C3—H3119.3C13—C12—C17118.60 (14)
C4—C3—H3119.3C13—C12—C11120.70 (14)
C3—C4—C5121.50 (17)C17—C12—C11120.70 (14)
C3—C4—H4119.2C12—C13—C14120.70 (17)
C5—C4—H4119.2C12—C13—H13119.6
C6—C5—C4116.84 (17)C14—C13—H13119.6
C6—C5—H5121.6C15—C14—C13120.04 (17)
C4—C5—H5121.6C15—C14—H14120.0
C5—C6—N2131.80 (14)C13—C14—H14120.0
C5—C6—C1121.45 (14)C14—C15—C16120.13 (16)
N2—C6—C1106.75 (12)C14—C15—H15119.9
O1—C7—N1126.96 (14)C16—C15—H15119.9
O1—C7—N2126.92 (14)C15—C16—C17120.12 (18)
N1—C7—N2106.13 (12)C15—C16—H16119.9
N1—C8—C9114.03 (14)C17—C16—H16119.9
N1—C8—H8A108.7C12—C17—C16120.40 (17)
C9—C8—H8A108.7C12—C17—H17119.8
N1—C8—H8B108.7C16—C17—H17119.8
C9—C8—H8B108.7C7—N1—C1109.97 (12)
H8A—C8—H8B107.6C7—N1—C8122.70 (14)
C10—C9—C8125.3 (2)C1—N1—C8127.18 (14)
C10—C9—H9117.4C7—N2—C6110.04 (12)
C8—C9—H9117.4C7—N2—C11123.15 (12)
C9—C10—H10A120.0C6—N2—C11126.76 (12)
C9—C10—H10B120.0
N1—C1—C2—C3−179.88 (14)C15—C16—C17—C12−0.5 (3)
C6—C1—C2—C30.6 (2)O1—C7—N1—C1178.76 (14)
C1—C2—C3—C4−0.4 (2)N2—C7—N1—C1−0.76 (15)
C2—C3—C4—C5−0.1 (3)O1—C7—N1—C82.9 (2)
C3—C4—C5—C60.6 (2)N2—C7—N1—C8−176.64 (12)
C4—C5—C6—N2179.56 (14)C2—C1—N1—C7−179.26 (14)
C4—C5—C6—C1−0.5 (2)C6—C1—N1—C70.34 (15)
C2—C1—C6—C5−0.1 (2)C2—C1—N1—C8−3.6 (2)
N1—C1—C6—C5−179.75 (12)C6—C1—N1—C8175.99 (13)
C2—C1—C6—N2179.87 (12)C9—C8—N1—C7−109.85 (18)
N1—C1—C6—N20.22 (14)C9—C8—N1—C175.0 (2)
N1—C8—C9—C10−121.4 (2)O1—C7—N2—C6−178.62 (14)
N2—C11—C12—C13−122.16 (15)N1—C7—N2—C60.90 (15)
N2—C11—C12—C1758.5 (2)O1—C7—N2—C11−1.0 (2)
C17—C12—C13—C14−0.7 (2)N1—C7—N2—C11178.55 (11)
C11—C12—C13—C14179.94 (15)C5—C6—N2—C7179.26 (14)
C12—C13—C14—C150.0 (3)C1—C6—N2—C7−0.70 (14)
C13—C14—C15—C160.5 (3)C5—C6—N2—C111.7 (2)
C14—C15—C16—C17−0.3 (3)C1—C6—N2—C11−178.24 (12)
C13—C12—C17—C160.9 (3)C12—C11—N2—C7−102.99 (15)
C11—C12—C17—C16−179.72 (16)C12—C11—N2—C674.25 (18)
D—H···AD—HH···AD···AD—H···A
C3—H3···O1i0.932.483.405 (2)173
C14—H14···O1ii0.932.563.330 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯O1i 0.932.483.405 (2)173
C14—H14⋯O1ii 0.932.563.330 (2)141

Symmetry codes: (i) ; (ii) .

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