Literature DB >> 21837191

1-Benzyl-1H-benzimidazol-2(3H)-one.

Younes Ouzidan, El Mokhtar Essassi, Santiago V Luis, Michael Bolte, Lahcen El Ammari.   

Abstract

The fused five- and six-membered rings in the title compound, C(14)H(12)N(2)O, are essentially planar, the largest deviation from the mean plane being 0.023 (2) Å. The dihedral angle between the benzimidazole mean plane and the phenyl ring is 68.50 (6)°. In the crystal, each mol-ecule is linked to its symmetry equivalent created by a crystallographic inversion center by pairs of N-H⋯O hydrogen bonds, forming inversion dimers.

Entities:  

Year:  2011        PMID: 21837191      PMCID: PMC3151763          DOI: 10.1107/S160053681102455X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of benzimidazole derivatives, see: Gravatt et al. (1994 ▶); Horton et al. (2003 ▶); Kim et al. (1996 ▶); Roth et al. (1997 ▶). For related structures, see: Ouzidan et al. (2011a ▶,b ▶).

Experimental

Crystal data

C14H12N2O M = 224.26 Monoclinic, a = 13.8652 (7) Å b = 5.7975 (3) Å c = 14.9337 (7) Å β = 109.5346 (12)° V = 1131.33 (10) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.50 × 0.44 × 0.28 mm

Data collection

Bruker CCD three-circle diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.959, T max = 0.977 9007 measured reflections 3392 independent reflections 2514 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.126 S = 1.05 3392 reflections 166 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681102455X/im2298sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681102455X/im2298Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681102455X/im2298Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12N2OF(000) = 472
Mr = 224.26Dx = 1.317 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3392 reflections
a = 13.8652 (7) Åθ = 1.7–30.5°
b = 5.7975 (3) ŵ = 0.09 mm1
c = 14.9337 (7) ÅT = 298 K
β = 109.5346 (12)°Prism, colourless
V = 1131.33 (10) Å30.50 × 0.44 × 0.28 mm
Z = 4
Bruker CCD three-circle diffractometer3392 independent reflections
Radiation source: fine-focus sealed tube2514 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 30.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −18→19
Tmin = 0.959, Tmax = 0.977k = −8→8
9007 measured reflectionsl = −16→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0584P)2 + 0.1866P] where P = (Fo2 + 2Fc2)/3
3392 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
O10.59908 (7)0.79068 (16)0.53088 (6)0.0462 (2)
N10.46509 (7)0.82117 (17)0.38695 (7)0.0391 (2)
H10.43870.94970.39580.066 (5)*
C10.54932 (8)0.72077 (19)0.45072 (8)0.0354 (2)
N20.56888 (7)0.52373 (16)0.40851 (7)0.0350 (2)
C20.49440 (8)0.49698 (19)0.31953 (8)0.0343 (2)
C30.47930 (10)0.3259 (2)0.25181 (9)0.0429 (3)
H30.52320.20030.26110.050 (4)*
C40.39558 (11)0.3498 (3)0.16918 (9)0.0513 (3)
H40.38340.23820.12200.060 (4)*
C50.32981 (10)0.5368 (3)0.15565 (9)0.0510 (3)
H50.27450.54770.09950.058 (4)*
C60.34472 (10)0.7081 (2)0.22409 (9)0.0455 (3)
H60.30020.83260.21510.056 (4)*
C70.42820 (9)0.68586 (19)0.30576 (8)0.0357 (2)
C80.64791 (9)0.3581 (2)0.45689 (8)0.0378 (2)
H8A0.61730.20600.45130.044 (4)*
H8B0.67440.39680.52390.041 (3)*
C110.73601 (8)0.34906 (19)0.41875 (8)0.0354 (2)
C120.75053 (11)0.1565 (2)0.36992 (10)0.0491 (3)
H120.70480.03390.35910.061 (5)*
C130.83286 (13)0.1452 (3)0.33705 (12)0.0638 (4)
H130.84160.01600.30360.088 (6)*
C140.90122 (13)0.3235 (3)0.35368 (12)0.0659 (4)
H140.95690.31450.33240.085 (6)*
C150.88757 (11)0.5165 (3)0.40199 (12)0.0597 (4)
H150.93380.63820.41290.068 (5)*
C160.80491 (10)0.5294 (2)0.43437 (10)0.0459 (3)
H160.79580.66010.46680.054 (4)*
U11U22U33U12U13U23
O10.0430 (5)0.0475 (5)0.0452 (5)−0.0005 (4)0.0110 (4)−0.0138 (4)
N10.0386 (5)0.0356 (5)0.0443 (5)0.0044 (4)0.0155 (4)−0.0033 (4)
C10.0336 (5)0.0348 (5)0.0411 (6)−0.0025 (4)0.0171 (5)−0.0040 (4)
N20.0330 (4)0.0349 (5)0.0367 (5)0.0019 (4)0.0114 (4)−0.0035 (4)
C20.0326 (5)0.0368 (5)0.0347 (5)−0.0011 (4)0.0130 (4)0.0000 (4)
C30.0447 (6)0.0405 (6)0.0429 (6)0.0018 (5)0.0137 (5)−0.0065 (5)
C40.0515 (7)0.0566 (8)0.0422 (7)−0.0042 (6)0.0109 (6)−0.0116 (6)
C50.0412 (6)0.0656 (9)0.0404 (6)−0.0013 (6)0.0060 (5)0.0005 (6)
C60.0381 (6)0.0500 (7)0.0479 (7)0.0064 (5)0.0134 (5)0.0065 (6)
C70.0346 (5)0.0364 (5)0.0395 (6)−0.0003 (4)0.0167 (5)0.0006 (4)
C80.0389 (6)0.0371 (6)0.0384 (6)0.0039 (4)0.0141 (5)0.0041 (5)
C110.0356 (5)0.0365 (5)0.0327 (5)0.0070 (4)0.0094 (4)0.0053 (4)
C120.0516 (7)0.0422 (7)0.0547 (8)0.0073 (6)0.0195 (6)−0.0022 (6)
C130.0697 (10)0.0637 (9)0.0675 (9)0.0226 (8)0.0354 (8)−0.0002 (8)
C140.0551 (9)0.0814 (11)0.0728 (10)0.0221 (8)0.0367 (8)0.0184 (9)
C150.0445 (7)0.0656 (9)0.0710 (10)−0.0033 (7)0.0221 (7)0.0141 (8)
C160.0446 (7)0.0432 (6)0.0499 (7)0.0009 (5)0.0158 (5)0.0008 (5)
O1—C11.2332 (14)C6—H60.9300
N1—C11.3660 (15)C8—C111.5114 (15)
N1—C71.3901 (15)C8—H8A0.9700
N1—H10.8600C8—H8B0.9700
C1—N21.3749 (14)C11—C161.3824 (17)
N2—C21.3922 (14)C11—C121.3845 (17)
N2—C81.4546 (14)C12—C131.387 (2)
C2—C31.3815 (16)C12—H120.9300
C2—C71.3991 (15)C13—C141.368 (3)
C3—C41.3897 (19)C13—H130.9300
C3—H30.9300C14—C151.379 (2)
C4—C51.387 (2)C14—H140.9300
C4—H40.9300C15—C161.3869 (19)
C5—C61.3902 (19)C15—H150.9300
C5—H50.9300C16—H160.9300
C6—C71.3783 (17)
C1—N1—C7110.31 (9)N1—C7—C2106.35 (10)
C1—N1—H1124.8N2—C8—C11113.90 (9)
C7—N1—H1124.8N2—C8—H8A108.8
O1—C1—N1127.38 (11)C11—C8—H8A108.8
O1—C1—N2125.88 (11)N2—C8—H8B108.8
N1—C1—N2106.74 (10)C11—C8—H8B108.8
C1—N2—C2109.46 (9)H8A—C8—H8B107.7
C1—N2—C8123.52 (10)C16—C11—C12119.00 (11)
C2—N2—C8126.56 (9)C16—C11—C8120.68 (11)
C3—C2—N2131.39 (10)C12—C11—C8120.30 (11)
C3—C2—C7121.52 (11)C11—C12—C13120.43 (14)
N2—C2—C7107.09 (9)C11—C12—H12119.8
C2—C3—C4117.10 (11)C13—C12—H12119.8
C2—C3—H3121.5C14—C13—C12120.16 (14)
C4—C3—H3121.5C14—C13—H13119.9
C5—C4—C3121.38 (12)C12—C13—H13119.9
C5—C4—H4119.3C13—C14—C15120.03 (14)
C3—C4—H4119.3C13—C14—H14120.0
C4—C5—C6121.48 (12)C15—C14—H14120.0
C4—C5—H5119.3C14—C15—C16120.02 (14)
C6—C5—H5119.3C14—C15—H15120.0
C7—C6—C5117.27 (11)C16—C15—H15120.0
C7—C6—H6121.4C11—C16—C15120.36 (13)
C5—C6—H6121.4C11—C16—H16119.8
C6—C7—N1132.40 (11)C15—C16—H16119.8
C6—C7—C2121.25 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.032.845 (1)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.032.845 (1)158

Symmetry code: (i) .

  7 in total

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