Literature DB >> 22590191

1-Octyl-1H-benzimidazol-2(3H)-one.

Dounia Belaziz, Youssef Kandri Rodi, El Mokhtar Essassi, Lahcen El Ammari.   

Abstract

In the title compound, C(15)H(22)N(2)O, the octyl group adopts an all-trans conformation. In the crystal, mol-ecules form centrosymmetric dimers with an R(2) (2)(8) graph-set motif, linked by pairs of N-H⋯O hydrogen bonds. In addition, C-H⋯O contacts are observed.

Entities:  

Year:  2012        PMID: 22590191      PMCID: PMC3344429          DOI: 10.1107/S1600536812013384

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to benzimidazol-2-one, see: Soderlind et al. (1999 ▶). For similar structures, see: Ouzidan et al. (2011 ▶); Kandri Rodi et al. (2011 ▶).

Experimental

Crystal data

C15H22N2O M = 246.35 Monoclinic, a = 14.8888 (18) Å b = 5.8395 (6) Å c = 16.6778 (19) Å β = 91.448 (3)° V = 1449.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.54 × 0.43 × 0.12 mm

Data collection

Bruker X8 APEX diffractometer 8760 measured reflections 3020 independent reflections 1971 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.143 S = 1.03 3020 reflections 164 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812013384/bt5862sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013384/bt5862Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812013384/bt5862Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H22N2OF(000) = 536
Mr = 246.35Dx = 1.129 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3020 reflections
a = 14.8888 (18) Åθ = 2.4–26.5°
b = 5.8395 (6) ŵ = 0.07 mm1
c = 16.6778 (19) ÅT = 296 K
β = 91.448 (3)°Needle, colourless
V = 1449.6 (3) Å30.54 × 0.43 × 0.12 mm
Z = 4
Bruker X8 APEX diffractometer1971 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
Graphite monochromatorθmax = 26.5°, θmin = 2.4°
φ and ω scansh = −18→18
8760 measured reflectionsk = −5→7
3020 independent reflectionsl = −19→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.143w = 1/[σ2(Fo2) + (0.0608P)2 + 0.2949P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3020 reflectionsΔρmax = 0.18 e Å3
164 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.010 (2)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
O10.94346 (9)0.1963 (2)0.56368 (7)0.0642 (4)
N10.94058 (10)0.1858 (2)0.42412 (8)0.0547 (4)
H10.96900.05980.41660.066*
N20.87525 (9)0.4734 (2)0.48345 (8)0.0517 (4)
C20.90690 (11)0.3264 (3)0.36345 (10)0.0486 (4)
C10.92224 (11)0.2755 (3)0.49722 (10)0.0509 (4)
C70.86541 (11)0.5096 (3)0.40093 (10)0.0499 (4)
C30.90920 (12)0.3128 (3)0.28082 (10)0.0596 (5)
H30.93680.19080.25540.072*
C60.82615 (14)0.6843 (3)0.35775 (12)0.0660 (5)
H60.79910.80740.38300.079*
C90.74157 (14)0.6002 (4)0.55652 (12)0.0696 (6)
H9A0.72320.71330.59540.084*
H9B0.71170.63670.50580.084*
C40.86880 (14)0.4880 (4)0.23756 (11)0.0684 (6)
H40.86880.48320.18180.082*
C80.84181 (13)0.6198 (3)0.54643 (11)0.0613 (5)
H8A0.85650.77760.53430.074*
H8B0.87210.58020.59670.074*
C50.82845 (15)0.6697 (4)0.27511 (12)0.0721 (6)
H50.80220.78520.24410.087*
C100.71026 (13)0.3677 (4)0.58346 (13)0.0743 (6)
H10A0.73990.33060.63430.089*
H10B0.72820.25400.54460.089*
C110.60948 (14)0.3539 (4)0.59315 (15)0.0855 (7)
H11A0.59220.46260.63400.103*
H11B0.58000.39940.54310.103*
C120.57598 (15)0.1199 (4)0.61598 (16)0.0896 (7)
H12B0.60500.07580.66630.107*
H12A0.59440.01120.57560.107*
C130.47537 (15)0.1006 (5)0.62485 (16)0.0932 (8)
H13A0.45680.20770.66570.112*
H13B0.44600.14490.57460.112*
C140.44383 (18)−0.1364 (6)0.64722 (19)0.1112 (9)
H14A0.4632−0.24300.60650.133*
H14B0.4734−0.17970.69740.133*
C150.3454 (2)−0.1625 (6)0.6560 (2)0.1342 (12)
H15A0.3320−0.31830.66970.201*
H15B0.3152−0.12350.60640.201*
H15C0.3255−0.06270.69770.201*
U11U22U33U12U13U23
O10.0772 (8)0.0636 (8)0.0520 (8)0.0168 (6)0.0057 (6)0.0123 (6)
N10.0628 (9)0.0464 (8)0.0552 (9)0.0099 (7)0.0081 (7)−0.0002 (7)
N20.0616 (9)0.0464 (8)0.0471 (8)0.0075 (7)0.0023 (6)0.0000 (6)
C20.0494 (9)0.0448 (9)0.0518 (9)−0.0031 (7)0.0033 (7)0.0014 (8)
C10.0515 (9)0.0476 (10)0.0538 (10)0.0006 (8)0.0054 (7)0.0034 (8)
C70.0569 (10)0.0452 (9)0.0474 (9)−0.0018 (8)0.0001 (7)0.0005 (7)
C30.0656 (11)0.0592 (11)0.0543 (11)−0.0016 (9)0.0079 (8)−0.0064 (9)
C60.0856 (14)0.0506 (11)0.0615 (12)0.0135 (10)−0.0020 (9)0.0009 (9)
C90.0782 (13)0.0693 (13)0.0614 (12)0.0253 (11)0.0050 (9)−0.0062 (10)
C40.0807 (13)0.0761 (14)0.0483 (10)−0.0052 (11)0.0001 (9)0.0033 (10)
C80.0783 (13)0.0520 (11)0.0536 (10)0.0100 (9)0.0000 (9)−0.0082 (9)
C50.0938 (15)0.0654 (13)0.0569 (12)0.0094 (11)−0.0057 (10)0.0111 (10)
C100.0684 (13)0.0785 (14)0.0764 (14)0.0186 (11)0.0086 (10)0.0031 (11)
C110.0713 (14)0.0938 (17)0.0919 (16)0.0211 (12)0.0106 (11)0.0036 (14)
C120.0739 (14)0.0947 (18)0.1004 (18)0.0153 (13)0.0087 (12)−0.0010 (15)
C130.0711 (14)0.107 (2)0.1020 (18)0.0144 (14)0.0064 (12)−0.0025 (16)
C140.0817 (17)0.112 (2)0.140 (3)0.0135 (16)0.0050 (16)0.0126 (19)
C150.088 (2)0.141 (3)0.174 (3)0.0011 (19)0.0011 (19)0.013 (2)
O1—C11.235 (2)C8—H8B0.9700
N1—C11.361 (2)C5—H50.9300
N1—C21.387 (2)C10—C111.515 (3)
N1—H10.8600C10—H10A0.9700
N2—C11.367 (2)C10—H10B0.9700
N2—C71.396 (2)C11—C121.507 (4)
N2—C81.452 (2)C11—H11A0.9700
C2—C31.382 (2)C11—H11B0.9700
C2—C71.391 (2)C12—C131.513 (3)
C7—C61.371 (2)C12—H12B0.9700
C3—C41.381 (3)C12—H12A0.9700
C3—H30.9300C13—C141.511 (4)
C6—C51.382 (3)C13—H13A0.9700
C6—H60.9300C13—H13B0.9700
C9—C101.507 (3)C14—C151.484 (4)
C9—C81.511 (3)C14—H14A0.9700
C9—H9A0.9700C14—H14B0.9700
C9—H9B0.9700C15—H15A0.9600
C4—C51.378 (3)C15—H15B0.9600
C4—H40.9300C15—H15C0.9600
C8—H8A0.9700
C1—N1—C2110.42 (14)C6—C5—H5119.2
C1—N1—H1124.8C9—C10—C11113.20 (18)
C2—N1—H1124.8C9—C10—H10A108.9
C1—N2—C7109.50 (14)C11—C10—H10A108.9
C1—N2—C8124.01 (14)C9—C10—H10B108.9
C7—N2—C8126.49 (14)C11—C10—H10B108.9
C3—C2—N1132.54 (16)H10A—C10—H10B107.8
C3—C2—C7120.98 (16)C12—C11—C10114.20 (18)
N1—C2—C7106.48 (14)C12—C11—H11A108.7
O1—C1—N1127.41 (16)C10—C11—H11A108.7
O1—C1—N2125.84 (16)C12—C11—H11B108.7
N1—C1—N2106.75 (14)C10—C11—H11B108.7
C6—C7—C2121.62 (16)H11A—C11—H11B107.6
C6—C7—N2131.52 (16)C11—C12—C13115.3 (2)
C2—C7—N2106.85 (14)C11—C12—H12B108.5
C4—C3—C2117.20 (17)C13—C12—H12B108.5
C4—C3—H3121.4C11—C12—H12A108.5
C2—C3—H3121.4C13—C12—H12A108.5
C7—C6—C5117.19 (18)H12B—C12—H12A107.5
C7—C6—H6121.4C14—C13—C12114.0 (2)
C5—C6—H6121.4C14—C13—H13A108.7
C10—C9—C8114.54 (16)C12—C13—H13A108.7
C10—C9—H9A108.6C14—C13—H13B108.7
C8—C9—H9A108.6C12—C13—H13B108.7
C10—C9—H9B108.6H13A—C13—H13B107.6
C8—C9—H9B108.6C15—C14—C13115.6 (2)
H9A—C9—H9B107.6C15—C14—H14A108.4
C5—C4—C3121.48 (18)C13—C14—H14A108.4
C5—C4—H4119.3C15—C14—H14B108.4
C3—C4—H4119.3C13—C14—H14B108.4
N2—C8—C9113.18 (15)H14A—C14—H14B107.4
N2—C8—H8A108.9C14—C15—H15A109.5
C9—C8—H8A108.9C14—C15—H15B109.5
N2—C8—H8B108.9H15A—C15—H15B109.5
C9—C8—H8B108.9C14—C15—H15C109.5
H8A—C8—H8B107.8H15A—C15—H15C109.5
C4—C5—C6121.53 (19)H15B—C15—H15C109.5
C4—C5—H5119.2
C1—N1—C2—C3178.89 (18)N1—C2—C3—C4−179.26 (18)
C1—N1—C2—C7−0.48 (18)C7—C2—C3—C40.0 (3)
C2—N1—C1—O1−178.99 (16)C2—C7—C6—C50.8 (3)
C2—N1—C1—N20.88 (18)N2—C7—C6—C5179.37 (18)
C7—N2—C1—O1178.93 (16)C2—C3—C4—C50.5 (3)
C8—N2—C1—O1−1.0 (3)C1—N2—C8—C9−105.19 (19)
C7—N2—C1—N1−0.95 (18)C7—N2—C8—C974.9 (2)
C8—N2—C1—N1179.15 (15)C10—C9—C8—N264.2 (2)
C3—C2—C7—C6−0.7 (3)C3—C4—C5—C6−0.3 (3)
N1—C2—C7—C6178.77 (17)C7—C6—C5—C4−0.3 (3)
C3—C2—C7—N2−179.57 (15)C8—C9—C10—C11179.88 (17)
N1—C2—C7—N2−0.11 (17)C9—C10—C11—C12177.1 (2)
C1—N2—C7—C6−178.07 (19)C10—C11—C12—C13−179.1 (2)
C8—N2—C7—C61.8 (3)C11—C12—C13—C14179.6 (2)
C1—N2—C7—C20.66 (18)C12—C13—C14—C15−179.7 (3)
C8—N2—C7—C2−179.44 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.012.8257 (19)159
C4—H4···O1ii0.932.523.312 (2)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.012.8257 (19)159
C4—H4⋯O1ii0.932.523.312 (2)144

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

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3.  1-Nonyl-1H-benzimidazol-2(3H)-one.

Authors:  Younes Ouzidan; Youssef Kandri Rodi; Raymond J Butcher; El Mokhtar Essassi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

4.  5-Chloro-1-nonyl-1H-benzimidazol-2(3H)-one.

Authors:  Youssef Kandri Rodi; Fouad Ouazzani Chahdi; El Mokhtar Essassi; Santiago V Luis; Michael Bolte; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-di-hydro-1H-1,3-benzo-diazol-2-one.

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2.  Crystal structure, Hirshfeld surface analysis and DFT studies of 1-benzyl-3-[(1-benzyl-1H-1,2,3-triazol-5-yl)meth-yl]-2,3-di-hydro-1H-1,3-benzo-diazol-2-one monohydrate.

Authors:  Asmaa Saber; Nada Kheira Sebbar; Tuncer Hökelek; Mohamed Labd Taha; Joel T Mague; Noureddine Hamou Ahabchane; El Mokhtar Essassi
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3.  1-Dodecyl-1H-benzo[d]imidazol-2(3H)-one.

Authors:  Dounia Belaziz; Youssef Kandri Rodi; Fouad Ouazzani Chahdi; El Mokhtar Essassi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

4.  1-Allyl-1H-1,3-benzimidazol-2(3H)-one.

Authors:  Dounia Belaziz; Youssef Kandri Rodi; Fouad Ouazzani Chahdi; El Mokhtar Essassi; Mohamed Saadi; Lahcen El Ammari
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