Literature DB >> 23476384

1-(4-Methyl-benz-yl)-1H-benzimidazol-2(3H)-one.

Dounia Belaziz1, Youssef Kandri Rodi, Fouad Ouazzani Chahdi, El Mokhtar Essassi, Mohamed Saadi, Lahcen El Ammari.   

Abstract

In the title compound, C15H14N2O, the fused five- and six-membered ring system is essentially planar, the maximum deviation from the mean plane being 0.009 (1) Å. The benzimidazol-2(3H)-one residue is nearly perpendicular to the benzyl ring, forming a dihedral angle of 77.41 (6)°. In the crystal, inversion dimers are formed by pairs of N-H⋯O hydrogen bonds; these dimers are linked by weak C-H⋯O inter-actions into a two-dimensional array in the (102) plane.

Entities:  

Year:  2012        PMID: 23476384      PMCID: PMC3588251          DOI: 10.1107/S1600536812050726

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological and biochemical properties of benzimidazole derivatives, see: Lee et al. (2004 ▶); Deligeorgiev et al. (2011 ▶); Scott et al. (2002 ▶); Gothelf et al. (1998 ▶). For related structures, see: Belaziz et al. (2012 ▶); Ouzidan et al. (2011 ▶).

Experimental

Crystal data

C15H14N2O M = 238.28 Monoclinic, a = 12.5585 (5) Å b = 5.7181 (2) Å c = 17.4153 (7) Å β = 95.277 (2)° V = 1245.31 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.51 × 0.42 × 0.15 mm

Data collection

Bruker X8 APEXII diffractometer 16486 measured reflections 3211 independent reflections 2157 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.122 S = 1.02 3211 reflections 164 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip,2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812050726/tk5182sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812050726/tk5182Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812050726/tk5182Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2OF(000) = 504
Mr = 238.28Dx = 1.271 Mg m3
Monoclinic, P21/nMelting point: 456 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 12.5585 (5) ÅCell parameters from 3211 reflections
b = 5.7181 (2) Åθ = 3.3–28.7°
c = 17.4153 (7) ŵ = 0.08 mm1
β = 95.277 (2)°T = 296 K
V = 1245.31 (8) Å3Block, colourless
Z = 40.51 × 0.42 × 0.15 mm
Bruker X8 APEXII diffractometer2157 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.029
Graphite monochromatorθmax = 28.7°, θmin = 3.3°
φ and ω scansh = −16→10
16486 measured reflectionsk = −7→7
3211 independent reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0511P)2 + 0.2271P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3211 reflectionsΔρmax = 0.17 e Å3
164 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0047 (19)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
O10.40817 (8)0.80403 (18)0.04185 (6)0.0541 (3)
N10.59419 (10)0.8138 (2)0.06169 (7)0.0456 (3)
H1N10.60360.94780.03170.055*
C60.67241 (12)0.6686 (2)0.09809 (7)0.0416 (3)
N20.50984 (9)0.51864 (19)0.10975 (6)0.0425 (3)
C90.41188 (10)0.3448 (2)0.21353 (8)0.0399 (3)
C50.61861 (11)0.4813 (2)0.12841 (7)0.0405 (3)
C80.42295 (12)0.3671 (2)0.12812 (8)0.0475 (4)
H8A0.43430.21270.10730.057*
H8B0.35650.42730.10290.057*
C40.67330 (13)0.3032 (3)0.16849 (8)0.0498 (4)
H40.63750.17830.18860.060*
C140.44588 (12)0.5170 (2)0.26587 (8)0.0498 (4)
H140.47780.65170.24870.060*
C100.36386 (12)0.1473 (3)0.24098 (9)0.0500 (4)
H100.34030.02910.20690.060*
C70.49498 (12)0.7221 (2)0.06784 (8)0.0425 (3)
C10.78212 (12)0.6843 (3)0.10756 (9)0.0518 (4)
H10.81810.80990.08790.062*
C30.78367 (13)0.3187 (3)0.17738 (9)0.0568 (4)
H30.82280.20120.20390.068*
C120.38486 (12)0.2947 (3)0.37129 (9)0.0568 (4)
C20.83703 (13)0.5043 (3)0.14782 (9)0.0581 (4)
H20.91130.50930.15500.070*
C110.35059 (12)0.1242 (3)0.31856 (9)0.0582 (4)
H110.3178−0.00950.33560.070*
C130.43294 (13)0.4911 (3)0.34360 (9)0.0580 (4)
H130.45710.60840.37790.070*
C150.37084 (17)0.2654 (5)0.45607 (11)0.0944 (7)
H15A0.39910.40000.48390.142*
H15B0.40840.12810.47530.142*
H15C0.29620.24950.46280.142*
U11U22U33U12U13U23
O10.0523 (7)0.0521 (6)0.0563 (6)0.0055 (5)−0.0040 (5)0.0144 (5)
N10.0529 (8)0.0409 (6)0.0424 (7)0.0004 (5)0.0018 (5)0.0097 (5)
C60.0511 (9)0.0410 (7)0.0326 (7)0.0025 (6)0.0027 (6)−0.0010 (5)
N20.0466 (7)0.0404 (6)0.0399 (6)0.0001 (5)0.0003 (5)0.0076 (5)
C90.0376 (8)0.0381 (7)0.0431 (8)0.0002 (5)−0.0018 (6)0.0029 (5)
C50.0484 (9)0.0403 (7)0.0323 (7)0.0019 (6)0.0006 (6)−0.0010 (5)
C80.0535 (9)0.0437 (7)0.0440 (8)−0.0072 (6)−0.0024 (7)0.0014 (6)
C40.0621 (10)0.0427 (8)0.0432 (8)0.0042 (6)−0.0029 (7)0.0051 (6)
C140.0565 (10)0.0425 (8)0.0497 (9)−0.0090 (6)0.0009 (7)−0.0003 (6)
C100.0496 (9)0.0448 (8)0.0542 (9)−0.0094 (6)−0.0019 (7)0.0020 (6)
C70.0520 (9)0.0398 (7)0.0348 (7)0.0029 (6)0.0000 (6)0.0033 (5)
C10.0519 (10)0.0568 (9)0.0471 (9)−0.0046 (7)0.0063 (7)−0.0004 (6)
C30.0599 (11)0.0558 (9)0.0526 (9)0.0145 (7)−0.0063 (8)0.0023 (7)
C120.0410 (9)0.0808 (12)0.0485 (9)0.0004 (8)0.0044 (7)0.0068 (8)
C20.0490 (10)0.0715 (11)0.0529 (9)0.0090 (8)0.0000 (7)−0.0049 (8)
C110.0481 (10)0.0646 (10)0.0619 (11)−0.0107 (7)0.0054 (8)0.0173 (8)
C130.0599 (11)0.0654 (10)0.0478 (9)−0.0044 (8)−0.0003 (7)−0.0104 (7)
C150.0829 (15)0.148 (2)0.0539 (12)−0.0091 (14)0.0142 (10)0.0111 (12)
O1—C71.2338 (16)C14—C131.386 (2)
N1—C71.3649 (18)C14—H140.9300
N1—C61.3933 (17)C10—C111.383 (2)
N1—H1N10.9411C10—H100.9300
C6—C11.375 (2)C1—C21.392 (2)
C6—C51.3959 (19)C1—H10.9300
N2—C71.3770 (16)C3—C21.380 (2)
N2—C51.3913 (17)C3—H30.9300
N2—C81.4521 (17)C12—C111.381 (2)
C9—C141.3822 (19)C12—C131.383 (2)
C9—C101.3857 (19)C12—C151.512 (2)
C9—C81.5120 (19)C2—H20.9300
C5—C41.3811 (18)C11—H110.9300
C8—H8A0.9700C13—H130.9300
C8—H8B0.9700C15—H15A0.9600
C4—C31.383 (2)C15—H15B0.9600
C4—H40.9300C15—H15C0.9600
C7—N1—C6110.24 (11)C9—C10—H10119.7
C7—N1—H1N1121.3O1—C7—N1127.42 (13)
C6—N1—H1N1128.2O1—C7—N2125.97 (13)
C1—C6—N1132.24 (13)N1—C7—N2106.61 (12)
C1—C6—C5121.27 (13)C6—C1—C2117.16 (14)
N1—C6—C5106.49 (12)C6—C1—H1121.4
C7—N2—C5109.63 (11)C2—C1—H1121.4
C7—N2—C8123.58 (12)C2—C3—C4121.57 (14)
C5—N2—C8126.76 (11)C2—C3—H3119.2
C14—C9—C10118.08 (13)C4—C3—H3119.2
C14—C9—C8122.55 (12)C11—C12—C13117.44 (15)
C10—C9—C8119.36 (12)C11—C12—C15120.94 (18)
C4—C5—N2131.55 (13)C13—C12—C15121.61 (17)
C4—C5—C6121.43 (14)C3—C2—C1121.44 (15)
N2—C5—C6107.02 (11)C3—C2—H2119.3
N2—C8—C9113.95 (11)C1—C2—H2119.3
N2—C8—H8A108.8C12—C11—C10121.61 (15)
C9—C8—H8A108.8C12—C11—H11119.2
N2—C8—H8B108.8C10—C11—H11119.2
C9—C8—H8B108.8C12—C13—C14121.43 (15)
H8A—C8—H8B107.7C12—C13—H13119.3
C5—C4—C3117.12 (14)C14—C13—H13119.3
C5—C4—H4121.4C12—C15—H15A109.5
C3—C4—H4121.4C12—C15—H15B109.5
C9—C14—C13120.74 (14)H15A—C15—H15B109.5
C9—C14—H14119.6C12—C15—H15C109.5
C13—C14—H14119.6H15A—C15—H15C109.5
C11—C10—C9120.69 (14)H15B—C15—H15C109.5
C11—C10—H10119.7
C7—N1—C6—C1−179.97 (14)C8—C9—C10—C11−178.65 (14)
C7—N1—C6—C5−0.56 (15)C6—N1—C7—O1−179.46 (13)
C7—N2—C5—C4−179.25 (14)C6—N1—C7—N21.05 (15)
C8—N2—C5—C4−1.2 (2)C5—N2—C7—O1179.35 (13)
C7—N2—C5—C60.82 (14)C8—N2—C7—O11.3 (2)
C8—N2—C5—C6178.83 (12)C5—N2—C7—N1−1.15 (15)
C1—C6—C5—C4−0.6 (2)C8—N2—C7—N1−179.24 (12)
N1—C6—C5—C4179.90 (12)N1—C6—C1—C2−179.93 (14)
C1—C6—C5—N2179.33 (12)C5—C6—C1—C20.7 (2)
N1—C6—C5—N2−0.16 (14)C5—C4—C3—C20.3 (2)
C7—N2—C8—C9−117.18 (14)C4—C3—C2—C1−0.1 (2)
C5—N2—C8—C965.08 (17)C6—C1—C2—C3−0.4 (2)
C14—C9—C8—N226.23 (19)C13—C12—C11—C100.2 (2)
C10—C9—C8—N2−155.20 (13)C15—C12—C11—C10−179.31 (17)
N2—C5—C4—C3−179.82 (14)C9—C10—C11—C12−0.4 (2)
C6—C5—C4—C30.1 (2)C11—C12—C13—C140.3 (2)
C10—C9—C14—C130.5 (2)C15—C12—C13—C14179.84 (16)
C8—C9—C14—C13179.13 (14)C9—C14—C13—C12−0.7 (2)
C14—C9—C10—C110.0 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1i0.941.912.8317 (15)166
C15—H15C···O1ii0.962.583.514 (2)165
C8—H8A···O1iii0.972.613.5504 (18)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O1i 0.941.912.8317 (15)166
C15—H15C⋯O1ii 0.962.583.514 (2)165
C8—H8A⋯O1iii 0.972.613.5504 (18)164

Symmetry codes: (i) ; (ii) ; (iii) .

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