Literature DB >> 23476381

1-(Prop-2-yn-yl)-1H-benzimidazol-2(3H)-one.

Younès Ouzidan1, Youssef Kandri Rodi, Fouad Ouazzani Chahdi, El Mokhtar Essassi, Mohamed Saadi, Lahcen El Ammari.   

Abstract

The benzimidazolone part of the title mol-ecule, C10H8N2O, is almost planar [r.m.s. deviation = 0.014 (1) Å] and the NCH2C CH group forms a dihedral angle of 67.95 (6)° with its best plane. In the crystal, mol-ecules form inversion dimers via pairs of N-H⋯O hydrogen bonds. C-H⋯O inter-actions connect the dimers, forming a two-dimensional polymeric network parallel to (100).

Entities:  

Year:  2012        PMID: 23476381      PMCID: PMC3588288          DOI: 10.1107/S160053681205088X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological and biochemical properties of benzimidazole dirivatives, see: Gravatt et al. (1994 ▶); Horton et al. (2003 ▶); Kim et al. (1996 ▶); Roth et al. (1997 ▶). For similar structures, see: Ouzidan, Kandri Rodi, Butcheret al. (2011 ▶); Ouzidan, Kandri Rodi, Fronczek et al. (2011 ▶); Ouzidan, Kandri Rodi, Jasinski et al. (2011 ▶); Belaziz et al. (2012 ▶).

Experimental

Crystal data

C10H8N2O M = 172.18 Monoclinic, a = 4.5553 (6) Å b = 18.001 (3) Å c = 10.7488 (13) Å β = 93.645 (8)° V = 879.6 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.41 × 0.32 × 0.15 mm

Data collection

Bruker X8 APEXII diffractometer 10826 measured reflections 2080 independent reflections 1753 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.101 S = 1.05 2080 reflections 119 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681205088X/gk2546sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681205088X/gk2546Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681205088X/gk2546Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2OF(000) = 360
Mr = 172.18Dx = 1.300 Mg m3
Monoclinic, P21/cMelting point: 399 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 4.5553 (6) ÅCell parameters from 2080 reflections
b = 18.001 (3) Åθ = 3.0–27.9°
c = 10.7488 (13) ŵ = 0.09 mm1
β = 93.645 (8)°T = 296 K
V = 879.6 (2) Å3Block, colourless
Z = 40.41 × 0.32 × 0.15 mm
Bruker X8 APEXII diffractometer1753 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.020
Graphite monochromatorθmax = 27.9°, θmin = 3.0°
φ and ω scansh = −5→5
10826 measured reflectionsk = −23→23
2080 independent reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.101w = 1/[σ2(Fo2) + (0.0493P)2 + 0.1197P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2080 reflectionsΔρmax = 0.16 e Å3
119 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.018 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
O10.43254 (19)0.40104 (4)0.43888 (7)0.0527 (2)
N10.25564 (19)0.46700 (5)0.60486 (8)0.0425 (2)
H10.35570.51250.59550.051*
N20.0986 (2)0.35310 (5)0.57304 (8)0.0436 (2)
C10.2795 (2)0.40708 (5)0.52935 (9)0.0412 (2)
C20.0662 (2)0.45135 (6)0.69742 (9)0.0412 (2)
C3−0.0238 (3)0.49315 (7)0.79538 (11)0.0523 (3)
H30.04200.54160.80870.063*
C4−0.2163 (3)0.46000 (9)0.87330 (12)0.0623 (4)
H4−0.28060.48680.94030.075*
C5−0.3150 (3)0.38814 (9)0.85397 (12)0.0625 (4)
H5−0.44460.36770.90800.075*
C6−0.2248 (3)0.34587 (7)0.75573 (11)0.0543 (3)
H6−0.29040.29740.74270.065*
C7−0.0329 (2)0.37902 (6)0.67788 (9)0.0421 (3)
C80.0605 (3)0.27990 (6)0.51808 (11)0.0539 (3)
H8A0.14970.27890.43850.065*
H8B−0.14780.26970.50290.065*
C90.1941 (3)0.22211 (6)0.59936 (12)0.0553 (3)
C100.2989 (4)0.17785 (7)0.66881 (15)0.0737 (4)
H100.37950.14240.72810.088*
U11U22U33U12U13U23
O10.0709 (5)0.0453 (4)0.0429 (4)−0.0091 (4)0.0121 (4)−0.0023 (3)
N10.0500 (5)0.0341 (4)0.0435 (5)−0.0036 (3)0.0030 (4)0.0009 (3)
N20.0516 (5)0.0355 (4)0.0434 (5)−0.0065 (4)0.0002 (4)0.0010 (3)
C10.0490 (6)0.0359 (5)0.0381 (5)−0.0023 (4)−0.0020 (4)0.0038 (4)
C20.0389 (5)0.0424 (5)0.0415 (5)0.0029 (4)−0.0029 (4)0.0030 (4)
C30.0491 (6)0.0549 (7)0.0525 (6)0.0059 (5)0.0004 (5)−0.0075 (5)
C40.0502 (7)0.0862 (10)0.0506 (7)0.0099 (6)0.0061 (5)−0.0070 (6)
C50.0464 (6)0.0881 (10)0.0536 (7)−0.0025 (6)0.0081 (5)0.0120 (6)
C60.0478 (6)0.0594 (7)0.0555 (7)−0.0086 (5)0.0009 (5)0.0114 (5)
C70.0401 (5)0.0444 (6)0.0411 (5)−0.0010 (4)−0.0038 (4)0.0049 (4)
C80.0690 (8)0.0412 (6)0.0505 (6)−0.0135 (5)−0.0032 (5)−0.0032 (5)
C90.0709 (8)0.0365 (6)0.0590 (7)−0.0124 (5)0.0083 (6)−0.0038 (5)
C100.0977 (11)0.0425 (7)0.0799 (10)−0.0040 (7)−0.0020 (8)0.0087 (6)
N1—C11.3583 (13)C8—H8A0.9700
N1—C21.3869 (13)C8—H8B0.9700
N1—H10.9458C9—C101.1725 (19)
N2—C11.3760 (13)C3—C41.3856 (18)
N2—C71.3900 (14)C3—H30.9300
N2—C81.4500 (13)C6—C51.3848 (19)
C2—C31.3775 (15)C6—H60.9300
C2—C71.3894 (15)C5—C41.381 (2)
O1—C11.2367 (13)C5—H50.9300
C7—C61.3835 (15)C4—H40.9300
C8—C91.4657 (17)C10—H100.9580
C1—N1—C2110.15 (9)N2—C8—H8B109.3
C1—N1—H1124.5C9—C8—H8B109.3
C2—N1—H1125.3H8A—C8—H8B108.0
C1—N2—C7109.75 (9)C10—C9—C8177.04 (14)
C1—N2—C8124.15 (9)C2—C3—C4117.20 (12)
C7—N2—C8126.08 (9)C2—C3—H3121.4
C3—C2—N1131.78 (10)C4—C3—H3121.4
C3—C2—C7121.20 (10)C7—C6—C5116.98 (12)
N1—C2—C7107.02 (9)C7—C6—H6121.5
C6—C7—C2121.62 (10)C5—C6—H6121.5
C6—C7—N2131.84 (10)C4—C5—C6121.32 (12)
C2—C7—N2106.54 (9)C4—C5—H5119.3
O1—C1—N1127.61 (9)C6—C5—H5119.3
O1—C1—N2125.87 (9)C5—C4—C3121.67 (12)
N1—C1—N2106.52 (9)C5—C4—H4119.2
N2—C8—C9111.58 (9)C3—C4—H4119.2
N2—C8—H8A109.3C9—C10—H10177.7
C9—C8—H8A109.3
C1—N1—C2—C3178.95 (11)C8—N2—C1—O1−0.04 (17)
C1—N1—C2—C7−0.44 (11)C7—N2—C1—N1−1.39 (11)
C3—C2—C7—C6−0.13 (16)C8—N2—C1—N1−179.94 (9)
N1—C2—C7—C6179.33 (9)C1—N2—C8—C9109.99 (12)
C3—C2—C7—N2−179.88 (9)C7—N2—C8—C9−68.32 (15)
N1—C2—C7—N2−0.42 (11)N1—C2—C3—C4−179.25 (10)
C1—N2—C7—C6−178.59 (11)C7—C2—C3—C40.07 (16)
C8—N2—C7—C6−0.07 (18)C2—C7—C6—C50.22 (16)
C1—N2—C7—C21.13 (11)N2—C7—C6—C5179.90 (11)
C8—N2—C7—C2179.65 (10)C7—C6—C5—C4−0.25 (18)
C2—N1—C1—O1−178.79 (10)C6—C5—C4—C30.2 (2)
C2—N1—C1—N21.12 (11)C2—C3—C4—C5−0.10 (18)
C7—N2—C1—O1178.52 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.951.882.8226 (12)174
C10—H10···O1ii0.962.393.2541 (17)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.951.882.8226 (12)174
C10—H10⋯O1ii 0.962.393.2541 (17)149

Symmetry codes: (i) ; (ii) .

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3.  1,3-Bis[2-(2-oxo-1,3-oxazolidin-3-yl)eth-yl]-1H-benzimidazol-2(3H)-one.

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