Literature DB >> 23181775

Cryo-electron microscopy--a primer for the non-microscopist.

Jacqueline L S Milne1, Mario J Borgnia, Alberto Bartesaghi, Erin E H Tran, Lesley A Earl, David M Schauder, Jeffrey Lengyel, Jason Pierson, Ardan Patwardhan, Sriram Subramaniam.   

Abstract

Cryo-electron microscopy (cryo-EM) is increasingly becoming a mainstream technology for studying the architecture of cells, viruses and protein assemblies at molecular resolution. Recent developments in microscope design and imaging hardware, paired with enhanced image processing and automation capabilities, are poised to further advance the effectiveness of cryo-EM methods. These developments promise to increase the speed and extent of automation, and to improve the resolutions that may be achieved, making this technology useful to determine a wide variety of biological structures. Additionally, established modalities for structure determination, such as X-ray crystallography and nuclear magnetic resonance spectroscopy, are being routinely integrated with cryo-EM density maps to achieve atomic-resolution models of complex, dynamic molecular assemblies. In this review, which is directed towards readers who are not experts in cryo-EM methodology, we provide an overview of emerging themes in the application of this technology to investigate diverse questions in biology and medicine. We discuss the ways in which these methods are being used to study structures of macromolecular assemblies that range in size from whole cells to small proteins. Finally, we include a description of how the structural information obtained by cryo-EM is deposited and archived in a publicly accessible database.
© 2012 The Authors Journal compilation © 2012 FEBS.

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Year:  2012        PMID: 23181775      PMCID: PMC3537914          DOI: 10.1111/febs.12078

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  109 in total

Review 1.  Cryo-electron microscopy of vitreous sections.

Authors:  Ashraf Al-Amoudi; Jiin-Ju Chang; Amélie Leforestier; Alasdair McDowall; Laurée Michel Salamin; Lars P O Norlén; Karsten Richter; Nathalie Sartori Blanc; Daniel Studer; Jacques Dubochet
Journal:  EMBO J       Date:  2004-08-19       Impact factor: 11.598

Review 2.  Electron cryotomography.

Authors:  Elitza I Tocheva; Zhuo Li; Grant J Jensen
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-05       Impact factor: 10.005

3.  Tomography of actin cytoskeletal networks.

Authors:  Dorit Hanein
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

4.  Automated electron microscope tomography using robust prediction of specimen movements.

Authors:  David N Mastronarde
Journal:  J Struct Biol       Date:  2005-10       Impact factor: 2.867

Review 5.  Cellular tomography.

Authors:  Andreas Hoenger; Cédric Bouchet-Marquis
Journal:  Adv Protein Chem Struct Biol       Date:  2011       Impact factor: 3.507

6.  Evidence of direct cell-cell fusion in Borrelia by cryogenic electron tomography.

Authors:  Mikhail Kudryashev; Marek Cyrklaff; Björn Alex; Leandro Lemgruber; Wolfgang Baumeister; Reinhard Wallich; Friedrich Frischknecht
Journal:  Cell Microbiol       Date:  2011-01-30       Impact factor: 3.715

7.  Reconstruction of three dimensional structures from electron micrographs.

Authors:  D J De Rosier; A Klug
Journal:  Nature       Date:  1968-01-13       Impact factor: 49.962

Review 8.  Membrane protein structure determination using cryo-electron tomography and 3D image averaging.

Authors:  Alberto Bartesaghi; Sriram Subramaniam
Journal:  Curr Opin Struct Biol       Date:  2009-07-29       Impact factor: 6.809

9.  Structure of the yeast F1Fo-ATP synthase dimer and its role in shaping the mitochondrial cristae.

Authors:  Karen M Davies; Claudio Anselmi; Ilka Wittig; José D Faraldo-Gómez; Werner Kühlbrandt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-03       Impact factor: 11.205

10.  Three-dimensional structure of basal body triplet revealed by electron cryo-tomography.

Authors:  Sam Li; Jose-Jesus Fernandez; Wallace F Marshall; David A Agard
Journal:  EMBO J       Date:  2011-12-13       Impact factor: 11.598

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  48 in total

1.  Single-particle electron microscopy in the study of membrane protein structure.

Authors:  Rita De Zorzi; Wei Mi; Maofu Liao; Thomas Walz
Journal:  Microscopy (Oxf)       Date:  2015-10-15       Impact factor: 1.571

Review 2.  Zooming in on the molecular mechanisms of endocytic budding by time-resolved electron microscopy.

Authors:  Fatima-Zahra Idrissi; María Isabel Geli
Journal:  Cell Mol Life Sci       Date:  2013-09-04       Impact factor: 9.261

Review 3.  Structure of IP3R channel: high-resolution insights from cryo-EM.

Authors:  Mariah R Baker; Guizhen Fan; Irina I Serysheva
Journal:  Curr Opin Struct Biol       Date:  2017-06-12       Impact factor: 6.809

Review 4.  Chemical cross-linking and native mass spectrometry: A fruitful combination for structural biology.

Authors:  Andrea Sinz; Christian Arlt; Dror Chorev; Michal Sharon
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

5.  The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota.

Authors:  Jean-Christophe Lagier; Perrine Hugon; Saber Khelaifia; Pierre-Edouard Fournier; Bernard La Scola; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

Review 6.  Protein-RNA interactions: structural biology and computational modeling techniques.

Authors:  Susan Jones
Journal:  Biophys Rev       Date:  2016-11-14

Review 7.  Zooming in on disordered systems: neutron reflection studies of proteins associated with fluid membranes.

Authors:  Frank Heinrich; Mathias Lösche
Journal:  Biochim Biophys Acta       Date:  2014-03-25

8.  Protein secondary structure determination by constrained single-particle cryo-electron tomography.

Authors:  Alberto Bartesaghi; Federico Lecumberry; Guillermo Sapiro; Sriram Subramaniam
Journal:  Structure       Date:  2012-12-05       Impact factor: 5.006

Review 9.  Organic anion-transporting polypeptides.

Authors:  Bruno Stieger; Bruno Hagenbuch
Journal:  Curr Top Membr       Date:  2014       Impact factor: 3.049

Review 10.  HIV-1 envelope glycoprotein structure.

Authors:  Alan Merk; Sriram Subramaniam
Journal:  Curr Opin Struct Biol       Date:  2013-04-18       Impact factor: 6.809

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