Literature DB >> 24674984

Zooming in on disordered systems: neutron reflection studies of proteins associated with fluid membranes.

Frank Heinrich1, Mathias Lösche2.   

Abstract

Neutron reflectometry (NR) is an emerging experimental technique for the structural characterization of proteins interacting with fluid bilayer membranes under conditions that mimic closely the cellular environment. Thus, cellular processes can be emulated in artificial systems and their molecular basis studied by adding cellular components one at a time in a well-controlled environment while the resulting structures, or structural changes in response to external cues, are monitored with neutron reflection. In recent years, sample environments, data collection strategies and data analysis were continuously refined. The combination of these improvements increases the information which can be obtained from NR to an extent that enables structural characterization of protein-membrane complexes at a length scale that exceeds the resolution of the measurement by far. Ultimately, the combination of NR with molecular dynamics (MD) simulations can be used to cross-validate the results of the two techniques and provide atomic-scale structural models. This review discusses these developments in detail and demonstrates how they provide new windows into relevant biomedical problems. This article is part of a Special Issue entitled: Interfacially Active Peptides and Proteins. Guest Editors: William C. Wimley and Kalina Hristova.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Composition-space modeling; MD simulation; Membrane protein; Membrane structure; Scattering techniques

Mesh:

Substances:

Year:  2014        PMID: 24674984      PMCID: PMC4082750          DOI: 10.1016/j.bbamem.2014.03.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  74 in total

1.  Electrostatic interactions and binding orientation of HIV-1 matrix studied by neutron reflectivity.

Authors:  Hirsh Nanda; Siddhartha A K Datta; Frank Heinrich; Mathias Lösche; Alan Rein; Susan Krueger; Joseph E Curtis
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

Review 2.  Ras, PI(3)K and mTOR signalling controls tumour cell growth.

Authors:  Reuben J Shaw; Lewis C Cantley
Journal:  Nature       Date:  2006-05-25       Impact factor: 49.962

Review 3.  Neutrons for biologists: a beginner's guide, or why you should consider using neutrons.

Authors:  Jeremy H Lakey
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

4.  Hybrid bilayer membranes in air and water: infrared spectroscopy and neutron reflectivity studies.

Authors:  C W Meuse; S Krueger; C F Majkrzak; J A Dura; J Fu; J T Connor; A L Plant
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

5.  Determination of lipid phase transition temperatures in hybrid bilayer membranes.

Authors:  Neil A Anderson; Lee J Richter; John C Stephenson; Kimberly A Briggman
Journal:  Langmuir       Date:  2006-09-26       Impact factor: 3.882

6.  The polymer-supported phospholipid bilayer: tethering as a new approach to substrate-membrane stabilization.

Authors:  Christoph A Naumann; O Prucker; T Lehmann; J Rühe; W Knoll; C W Frank
Journal:  Biomacromolecules       Date:  2002 Jan-Feb       Impact factor: 6.988

7.  Membrane association of the PTEN tumor suppressor: electrostatic interaction with phosphatidylserine-containing bilayers and regulatory role of the C-terminal tail.

Authors:  Siddharth S Shenoy; Hirsh Nanda; Mathias Lösche
Journal:  J Struct Biol       Date:  2012-10-13       Impact factor: 2.867

8.  Bacterial S-layer protein coupling to lipids: x-ray reflectivity and grazing incidence diffraction studies.

Authors:  M Weygand; B Wetzer; D Pum; U B Sleytr; N Cuvillier; K Kjaer; P B Howes; M Lösche
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

9.  Conformational transition of membrane-associated terminally acylated HIV-1 Nef.

Authors:  Bulent Akgun; Sushil Satija; Hirsh Nanda; Gregory F Pirrone; Xiaomeng Shi; John R Engen; Michael S Kent
Journal:  Structure       Date:  2013-09-12       Impact factor: 5.006

10.  PI3K signalling: the path to discovery and understanding.

Authors:  Bart Vanhaesebroeck; Len Stephens; Phillip Hawkins
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-23       Impact factor: 94.444

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  23 in total

1.  Membrane Anchoring of Hck Kinase via the Intrinsically Disordered SH4-U and Length Scale Associated with Subcellular Localization.

Authors:  Matthew P Pond; Rebecca Eells; Bradley W Treece; Frank Heinrich; Mathias Lösche; Benoît Roux
Journal:  J Mol Biol       Date:  2019-12-23       Impact factor: 5.469

2.  Protein Adsorption and Layer Formation at the Stainless Steel-Solution Interface Mediates Shear-Induced Particle Formation for an IgG1 Monoclonal Antibody.

Authors:  Cavan K Kalonia; Frank Heinrich; Joseph E Curtis; Sid Raman; Maria A Miller; Steven D Hudson
Journal:  Mol Pharm       Date:  2018-02-20       Impact factor: 4.939

3.  Information gain from isotopic contrast variation in neutron reflectometry on protein-membrane complex structures.

Authors:  Frank Heinrich; Paul A Kienzle; David P Hoogerheide; Mathias Lösche
Journal:  J Appl Crystallogr       Date:  2020-05-29       Impact factor: 3.304

4.  The hanging heart: How KRAS lures its prey to the membrane.

Authors:  Dirk Kessler; Darryl B McConnell
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-30       Impact factor: 11.205

5.  Association of Model Neurotransmitters with Lipid Bilayer Membranes.

Authors:  Brian P Josey; Frank Heinrich; Vitalii Silin; Mathias Lösche
Journal:  Biophys J       Date:  2020-01-28       Impact factor: 4.033

Review 6.  Sensitivity of peripheral membrane proteins to the membrane context: A case study of phosphatidylserine and the TIM proteins.

Authors:  Daniel Kerr; Gregory T Tietjen; Zhiliang Gong; Emad Tajkhorshid; Erin J Adams; Ka Yee C Lee
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-06-18       Impact factor: 3.747

7.  HIV-1 matrix-31 membrane binding peptide interacts differently with membranes containing PS vs. PI(4,5)P2.

Authors:  Lauren O'Neil; Kathryn Andenoro; Isabella Pagano; Laura Carroll; Leah Langer; Zachary Dell; Davina Perera; Bradley W Treece; Frank Heinrich; Mathias Lösche; John F Nagle; Stephanie Tristram-Nagle
Journal:  Biochim Biophys Acta       Date:  2016-09-15

8.  Selective Interaction of Colistin with Lipid Model Membranes.

Authors:  Fernando G Dupuy; Isabella Pagano; Kathryn Andenoro; Maria F Peralta; Yasmene Elhady; Frank Heinrich; Stephanie Tristram-Nagle
Journal:  Biophys J       Date:  2018-02-27       Impact factor: 4.033

9.  Structural features of membrane-bound glucocerebrosidase and α-synuclein probed by neutron reflectometry and fluorescence spectroscopy.

Authors:  Thai Leong Yap; Zhiping Jiang; Frank Heinrich; James M Gruschus; Candace M Pfefferkorn; Marilia Barros; Joseph E Curtis; Ellen Sidransky; Jennifer C Lee
Journal:  J Biol Chem       Date:  2014-11-26       Impact factor: 5.157

10.  Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane.

Authors:  Que N Van; Cesar A López; Marco Tonelli; Troy Taylor; Ben Niu; Christopher B Stanley; Debsindhu Bhowmik; Timothy H Tran; Peter H Frank; Simon Messing; Patrick Alexander; Daniel Scott; Xiaoying Ye; Matt Drew; Oleg Chertov; Mathias Lösche; Arvind Ramanathan; Michael L Gross; Nicolas W Hengartner; William M Westler; John L Markley; Dhirendra K Simanshu; Dwight V Nissley; William K Gillette; Dominic Esposito; Frank McCormick; S Gnanakaran; Frank Heinrich; Andrew G Stephen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

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