Literature DB >> 19646859

Membrane protein structure determination using cryo-electron tomography and 3D image averaging.

Alberto Bartesaghi1, Sriram Subramaniam.   

Abstract

The vast majority of membrane protein complexes of biological interest cannot be purified to homogeneity, or removed from a physiologically relevant context without loss of function. It is therefore not possible to easily determine the 3D structures of these protein complexes using X-ray crystallography or conventional cryo-electron microscopy. Newly emerging methods that combine cryo-electron tomography with 3D image classification and averaging are, however, beginning to provide unique opportunities for in situ determination of the structures of membrane protein assemblies in intact cells and nonsymmetric viruses. Here we review recent progress in this field and assess the potential of these methods to describe the conformation of membrane proteins in their native environment.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19646859      PMCID: PMC2752674          DOI: 10.1016/j.sbi.2009.06.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  29 in total

1.  CTF determination and correction in electron cryotomography.

Authors:  J J Fernández; S Li; R A Crowther
Journal:  Ultramicroscopy       Date:  2006-03-23       Impact factor: 2.689

2.  In situ structure of the complete Treponema primitia flagellar motor.

Authors:  Gavin E Murphy; Jared R Leadbetter; Grant J Jensen
Journal:  Nature       Date:  2006-08-02       Impact factor: 49.962

3.  High-resolution three-dimensional imaging of dislocations.

Authors:  J S Barnard; J Sharp; J R Tong; P A Midgley
Journal:  Science       Date:  2006-07-21       Impact factor: 47.728

4.  3D reconstruction and processing of volumetric data in cryo-electron tomography.

Authors:  Hanspeter Winkler
Journal:  J Struct Biol       Date:  2006-08-11       Impact factor: 2.867

5.  Classification of cryo-electron sub-tomograms using constrained correlation.

Authors:  Friedrich Förster; Sabine Pruggnaller; Anja Seybert; Achilleas S Frangakis
Journal:  J Struct Biol       Date:  2007-07-26       Impact factor: 2.867

Review 6.  Bacterial chemoreceptors: high-performance signaling in networked arrays.

Authors:  Gerald L Hazelbauer; Joseph J Falke; John S Parkinson
Journal:  Trends Biochem Sci       Date:  2007-12-31       Impact factor: 13.807

Review 7.  Visualizing cells at the nanoscale.

Authors:  Andrew Leis; Beate Rockel; Lars Andrees; Wolfgang Baumeister
Journal:  Trends Biochem Sci       Date:  2008-12-26       Impact factor: 13.807

8.  Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy.

Authors:  Yao Cong; Qinfen Zhang; David Woolford; Thorsten Schweikardt; Htet Khant; Matthew Dougherty; Steven J Ludtke; Wah Chiu; Heinz Decker
Journal:  Structure       Date:  2009-05-13       Impact factor: 5.006

Review 9.  Electron crystallography as a technique to study the structure on membrane proteins in a lipidic environment.

Authors:  Stefan Raunser; Thomas Walz
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

10.  Cryoelectron tomography of HIV-1 envelope spikes: further evidence for tripod-like legs.

Authors:  Ping Zhu; Hanspeter Winkler; Elena Chertova; Kenneth A Taylor; Kenneth H Roux
Journal:  PLoS Pathog       Date:  2008-11-14       Impact factor: 6.823

View more
  22 in total

1.  Comparing shapes, understanding evolution.

Authors:  Guillermo Sapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-31       Impact factor: 11.205

2.  Analysis of the intact surface layer of Caulobacter crescentus by cryo-electron tomography.

Authors:  Fernando Amat; Luis R Comolli; John F Nomellini; Farshid Moussavi; Kenneth H Downing; John Smit; Mark Horowitz
Journal:  J Bacteriol       Date:  2010-09-10       Impact factor: 3.490

3.  Current limitations in native mass spectrometry based structural biology.

Authors:  Esther van Duijn
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-04       Impact factor: 3.109

4.  Trimeric HIV-1 glycoprotein gp140 immunogens and native HIV-1 envelope glycoproteins display the same closed and open quaternary molecular architectures.

Authors:  Audray Harris; Mario J Borgnia; Dan Shi; Alberto Bartesaghi; Haifeng He; Robert Pejchal; Yun Kenneth Kang; Rafael Depetris; Andre J Marozsan; Rogier W Sanders; Per Johan Klasse; Jacqueline L S Milne; Ian A Wilson; William C Olson; John P Moore; Sriram Subramaniam
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-27       Impact factor: 11.205

5.  Subtomogram alignment by adaptive Fourier coefficient thresholding.

Authors:  Fernando Amat; Luis R Comolli; Farshid Moussavi; John Smit; Kenneth H Downing; Mark Horowitz
Journal:  J Struct Biol       Date:  2010-06-01       Impact factor: 2.867

Review 6.  Advances in tomography: probing the molecular architecture of cells.

Authors:  Karen Fridman; Asaf Mader; Monika Zwerger; Natalie Elia; Ohad Medalia
Journal:  Nat Rev Mol Cell Biol       Date:  2012-10-10       Impact factor: 94.444

Review 7.  Different approaches to modeling analysis of mitochondrial swelling.

Authors:  Sabzali Javadov; Xavier Chapa-Dubocq; Vladimir Makarov
Journal:  Mitochondrion       Date:  2017-08-10       Impact factor: 4.160

8.  Computational separation of conformational heterogeneity using cryo-electron tomography and 3D sub-volume averaging.

Authors:  Gabriel A Frank; Alberto Bartesaghi; Oleg Kuybeda; Mario J Borgnia; Tommi A White; Guillermo Sapiro; Sriram Subramaniam
Journal:  J Struct Biol       Date:  2012-01-10       Impact factor: 2.867

Review 9.  Using X-ray Footprinting and Mass Spectrometry to Study the Structure and Function of Membrane Proteins.

Authors:  Sayan Gupta
Journal:  Protein Pept Lett       Date:  2019       Impact factor: 1.890

10.  Protein secondary structure determination by constrained single-particle cryo-electron tomography.

Authors:  Alberto Bartesaghi; Federico Lecumberry; Guillermo Sapiro; Sriram Subramaniam
Journal:  Structure       Date:  2012-12-05       Impact factor: 5.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.