Literature DB >> 2315040

Guanine tracts enhance sequence directed DNA bends.

D L Milton1, M L Casper, N M Wills, R F Gesteland.   

Abstract

Synthetic DNA fragments were constructed to determine the effect of G tracts, in conjunction with periodically spaced A tracts, on DNA bends. Relative length measurements showed that the G tracts spaced at the half helical turn enhanced the DNA bend. When the G tract was interrupted with a thymine or shortened to one or two guanines, the relative lengths decreased. If the G tract was replaced with either an A tract or a T tract, the bend was cancelled. Replacement with a C tract decreased the relative length to that of a thymine interruption suggesting that bend enhancement due to G tracts requires A tracts on the same strand.

Entities:  

Mesh:

Substances:

Year:  1990        PMID: 2315040      PMCID: PMC330332          DOI: 10.1093/nar/18.4.817

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure.

Authors:  R E Dickerson; H R Drew
Journal:  J Mol Biol       Date:  1981-07-15       Impact factor: 5.469

2.  A computer graphics study of sequence-directed bending in DNA.

Authors:  S D Levene; D M Crothers
Journal:  J Biomol Struct Dyn       Date:  1983-10

3.  DNA structural variations in the E. coli tyrT promoter.

Authors:  H R Drew; A A Travers
Journal:  Cell       Date:  1984-06       Impact factor: 41.582

4.  Molecular structure of the octamer d(G-G-C-C-G-G-C-C): modified A-DNA.

Authors:  A H Wang; S Fujii; J H van Boom; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1982-07       Impact factor: 11.205

5.  Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G.

Authors:  B N Conner; C Yoon; J L Dickerson; R E Dickerson
Journal:  J Mol Biol       Date:  1984-04-25       Impact factor: 5.469

6.  Sequence-dependent conformation of an A-DNA double helix. The crystal structure of the octamer d(G-G-T-A-T-A-C-C).

Authors:  Z Shakked; D Rabinovich; O Kennard; W B Cruse; S A Salisbury; M A Viswamitra
Journal:  J Mol Biol       Date:  1983-05-15       Impact factor: 5.469

7.  The pitch of chromatin DNA is reflected in its nucleotide sequence.

Authors:  E N Trifonov; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  1980-07       Impact factor: 11.205

8.  Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.

Authors:  A V Fratini; M L Kopka; H R Drew; R E Dickerson
Journal:  J Biol Chem       Date:  1982-12-25       Impact factor: 5.157

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  DNA structural variations produced by actinomycin and distamycin as revealed by DNAase I footprinting.

Authors:  K R Fox; M J Waring
Journal:  Nucleic Acids Res       Date:  1984-12-21       Impact factor: 16.971

View more
  7 in total

1.  Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.

Authors:  A Bolshoy; P McNamara; R E Harrington; E N Trifonov
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

2.  Monovalent cation binding by curved DNA molecules containing variable numbers of a-tracts.

Authors:  Yongjun Lu; Nancy C Stellwagen
Journal:  Biophys J       Date:  2007-11-09       Impact factor: 4.033

3.  Curved DNA without AA/TT dinucleotide step.

Authors:  I Brukner; V Jurukovski; M Konstantinović; A Savić
Journal:  Nucleic Acids Res       Date:  1991-07-11       Impact factor: 16.971

4.  A single-stranded DNA binding protein binds the origin of replication of the duplex kinetoplast DNA.

Authors:  D Avrahami; Y Tzfati; J Shlomai
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-07       Impact factor: 11.205

5.  Oligo[d(C).(G)] runs exhibit a helical repeat of 11.1 bp in solution and cause slight DNA curvature when properly phased.

Authors:  M Biburger; M Niederweis; W Hillen
Journal:  Nucleic Acids Res       Date:  1994-05-11       Impact factor: 16.971

Review 6.  Recent findings on the mechanisms involved in tenofovir resistance.

Authors:  Pinar Iyidogan; Karen S Anderson
Journal:  Antivir Chem Chemother       Date:  2014-12-16

7.  Repeat units from a maize rDNA external spacer region exhibit DNA curvature and interact with high-mobility-group proteins.

Authors:  E A Griess; K D Grasser; G Feix
Journal:  Planta       Date:  1993       Impact factor: 4.116

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.