Literature DB >> 6933438

The pitch of chromatin DNA is reflected in its nucleotide sequence.

E N Trifonov, J L Sussman.   

Abstract

A correlation analysis of chromatin DNA nucleotide sequences reveals the clear tendency of some of the dinucleotides to be repeated along the sequences with periods of 3 and about 10.5 bases. This latter period, which is equal within experimental error to recent estimates of the pitch of the DNA double helix [Wang, J. (1979) Proc. Natl. Acad. Sci. USA 76, 200-203; Trifonov, E. & Bettecken, T. (1979) Biochemistry 18, 454-456] is interpreted as a reflection of the deformational anisotropy of the DNA molecule that facilitates its smooth folding in chromatin.

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Year:  1980        PMID： 6933438      PMCID： PMC349717          DOI： 10.1073/pnas.77.7.3816

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  54 in total

1.  Folding of the DNA double helix in chromatin-like structures from simian virus 40.

Authors:  J E Germond; B Hirt; P Oudet; M Gross-Bellark; P Chambon
Journal:  Proc Natl Acad Sci U S A       Date:  1975-05       Impact factor: 11.205

2.  Mapping DNAase l-susceptible sites in nucleosomes labeled at the 5' ends.

Authors:  R T Simpson; J P Whitlock
Journal:  Cell       Date:  1976-10       Impact factor: 41.582

3.  Nucleotide sequence and amplification in bacteria of structural gene for rat growth hormone.

Authors:  P H Seeburg; J Shine; J A Martial; J D Baxter; H M Goodman
Journal:  Nature       Date:  1977-12-08       Impact factor: 49.962

Review 4.  Structure of chromatin.

Authors:  R D Kornberg
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

5.  Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein.

Authors:  W Min Jou; G Haegeman; M Ysebaert; W Fiers
Journal:  Nature       Date:  1972-05-12       Impact factor: 49.962

6.  The primary structure of rabbit beta-globin mRNA as determined from cloned DNA.

Authors:  A Efstratiadis; F C Kafatos; T Maniatis
Journal:  Cell       Date:  1977-04       Impact factor: 41.582

7.  A-protein gene of bacteriophage MS2.

Authors:  W Fiers; R Contreras; F Duerinck; G Haegmean; J Merregaert; W M Jou; A Raeymakers; G Volckaert; M Ysebaert; J Van de Kerckhove; F Nolf; M Van Montagu
Journal:  Nature       Date:  1975-07-24       Impact factor: 49.962

8.  DNA folding in the nucleosome.

Authors:  M Noll
Journal:  J Mol Biol       Date:  1977-10-15       Impact factor: 5.469

9.  Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.

Authors:  W Fiers; R Contreras; F Duerinck; G Haegeman; D Iserentant; J Merregaert; W Min Jou; F Molemans; A Raeymaekers; A Van den Berghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1976-04-08       Impact factor: 49.962

10.  Rat insulin genes: construction of plasmids containing the coding sequences.

Authors:  A Ullrich; J Shine; J Chirgwin; R Pictet; E Tischer; W J Rutter; H M Goodman
Journal:  Science       Date:  1977-06-17       Impact factor: 47.728
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  148 in total

1.  The global intrinsic curvature of archaeal and eubacterial genomes is mostly contained in their dinucleotide composition and is probably not an adaptation.

Authors:  E Merino; A Garciarrubio
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  DNA A-tract bending in three dimensions: solving the dA4T4 vs. dT4A4 conundrum.

Authors:  Richard Stefl; Haihong Wu; Sapna Ravindranathan; Vladimír Sklenár; Juli Feigon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-22       Impact factor: 11.205

3.  Gene prediction by spectral rotation measure: a new method for identifying protein-coding regions.

Authors:  Daniel Kotlar; Yizhar Lavner
Journal:  Genome Res       Date:  2003-07-17       Impact factor: 9.043

4.  Introns of the chicken ovalbumin gene promote nucleosome alignment in vitro.

Authors:  J D Lauderdale; A Stein
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

5.  RIP60, a mammalian origin-binding protein, enhances DNA bending near the dihydrofolate reductase origin of replication.

Authors:  M S Caddle; L Dailey; N H Heintz
Journal:  Mol Cell Biol       Date:  1990-12       Impact factor: 4.272

6.  Comparative analysis of sequence periodicity among prokaryotic genomes points to differences in nucleoid structure and a relationship to gene expression.

Authors:  Jan Mrázek
Journal:  J Bacteriol       Date:  2010-05-21       Impact factor: 3.490

7.  Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.

Authors:  A Bolshoy; P McNamara; R E Harrington; E N Trifonov
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

8.  Nucleosome-mediated cooperativity between transcription factors.

Authors:  Leonid A Mirny
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

9.  Effects of diaminopurine and inosine substitutions on A-tract induced DNA curvature. Importance of the 3'-A-tract junction.

Authors:  N E Mollegaard; C Bailly; M J Waring; P E Nielsen
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

10.  Hydroxyl radical footprints reveal novel structural features around the NF I binding site in adenovirus DNA.

Authors:  H Zorbas; L Rogge; M Meisterernst; E L Winnacker
Journal:  Nucleic Acids Res       Date:  1989-10-11       Impact factor: 16.971
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