Literature DB >> 8202355

Oligo[d(C).(G)] runs exhibit a helical repeat of 11.1 bp in solution and cause slight DNA curvature when properly phased.

M Biburger1, M Niederweis, W Hillen.   

Abstract

We have inserted d(C)10 in a set of DNA fragments with bent segments on both ends, which are rotated with respect to each other by base pair wise increasing insertions. The electrophoretic mobilities on polyacrylamide gels of these DNA fragments were used to identify insertion sizes with cis conformations of the bent ends. These experiments revealed a helical repeat in solution of d(C).d(G) tracts of 11.1 +/- 0.08 bp. The electrophoretic mobilities of ligation ladders with properly phased d(C)5 and d(C)16 runs demonstrate a small but clearly detectable curvature of these fragments.

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Year:  1994        PMID: 8202355      PMCID: PMC308030          DOI: 10.1093/nar/22.9.1562

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  36 in total

1.  In vitro evolution of intrinsically bent DNA.

Authors:  B A Beutel; L Gold
Journal:  J Mol Biol       Date:  1992-12-05       Impact factor: 5.469

2.  Functional replacement of a protein-induced bend in a DNA recombination site.

Authors:  S D Goodman; H A Nash
Journal:  Nature       Date:  1989-09-21       Impact factor: 49.962

3.  Characterization of inherent curvature in DNA lacking polyadenine runs.

Authors:  P T McNamara; R E Harrington
Journal:  J Biol Chem       Date:  1991-07-05       Impact factor: 5.157

4.  Molecular structure of a complete turn of A-DNA.

Authors:  N Verdaguer; J Aymami; D Fernández-Forner; I Fita; M Coll; T Huynh-Dinh; J Igolen; J A Subirana
Journal:  J Mol Biol       Date:  1991-09-20       Impact factor: 5.469

5.  Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements.

Authors:  I Brukner; M Dlakic; A Savic; S Susic; S Pongor; D Suck
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

Review 6.  The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences.

Authors:  R D Wells; D A Collier; J C Hanvey; M Shimizu; F Wohlrab
Journal:  FASEB J       Date:  1988-11       Impact factor: 5.191

7.  Electrophoretic analysis of protein-induced DNA bending and twist changes.

Authors:  M Niederweis; W Hillen
Journal:  Electrophoresis       Date:  1993-08       Impact factor: 3.535

8.  Cationic metal-specific structures adopted by the poly(dG) region and the direct repeats in the chicken adult beta A globin gene promoter.

Authors:  Y Kohwi
Journal:  Nucleic Acids Res       Date:  1989-06-26       Impact factor: 16.971

9.  A DNA curvature can substitute phage phi 29 regulatory protein p4 when acting as a transcriptional repressor.

Authors:  F Rojo; M Salas
Journal:  EMBO J       Date:  1991-11       Impact factor: 11.598

10.  Muscle-specific expression of the acetylcholine receptor alpha-subunit gene requires both positive and negative interactions between myogenic factors, Sp1 and GBF factors.

Authors:  J L Bessereau; D Mendelzon; C LePoupon; M Fiszman; J P Changeux; J Piette
Journal:  EMBO J       Date:  1993-02       Impact factor: 11.598

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  2 in total

1.  Comparison of the solution and crystal conformations of (G + C)-rich fragments of DNA.

Authors:  M Vorlícková; J A Subirana; J Chládková; I Tejralová; T Huynh-Dinh; L Arnold; J Kypr
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

2.  Selection of primer-template sequences that bind human immunodeficiency virus reverse transcriptase with high affinity.

Authors:  Jeffrey J DeStefano; Jason V Cristofaro
Journal:  Nucleic Acids Res       Date:  2006-01-05       Impact factor: 16.971

  2 in total

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