Literature DB >> 1852605

Curved DNA without AA/TT dinucleotide step.

I Brukner1, V Jurukovski, M Konstantinović, A Savić.   

Abstract

The evidence is accumulating that dinucleotide steps other than AA/TT affect DNA flexure of AnTm (m + n greater than = 4) containing fragments. However, it is not clear whether macroscopic DNA flexure without AA/TT steps might occur. In this paper we demonstrate the anomaly in electrophoretic mobility of non AA/TT repetitive DNA sequences which is a function of sequence phasing. Therefore, our results show that PyPu (TA) and AG/CT steps, angulary separated by close to 180 degrees from Pu/Py (GC) and GG/CC steps, bend DNA, even in the absence of AnTm tracts.

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Year:  1991        PMID： 1852605      PMCID： PMC328378          DOI： 10.1093/nar/19.13.3549

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  28 in total

1.  Sequence-dependent kinks induced in curved DNA.

Authors:  P T McNamara; A Bolshoy; E N Trifonov; R E Harrington
Journal:  J Biomol Struct Dyn       Date:  1990-12

2.  Bent helical structure in kinetoplast DNA.

Authors:  J C Marini; S D Levene; D M Crothers; P T Englund
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

3.  New insights into the structure of An tracts and B'-B' bends in DNA.

Authors:  V P Chuprina; B R Reid
Journal:  Biochemistry       Date:  1991-01-15       Impact factor: 3.162

4.  DNA curvature in native and modified EcoRI recognition sites and possible influence upon the endonuclease cleavage reaction.

Authors:  S Diekmann; L W McLaughlin
Journal:  J Mol Biol       Date:  1988-08-20       Impact factor: 5.469

5.  Calibration of DNA curvature and a unified description of sequence-directed bending.

Authors:  H S Koo; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1988-03       Impact factor: 11.205

6.  The intrinsic curvature of DNA in solution.

Authors:  C R Calladine; H R Drew; M J McCall
Journal:  J Mol Biol       Date:  1988-05-05       Impact factor: 5.469

7.  Structure of an alternating-B DNA helix and its relationship to A-tract DNA.

Authors:  C Yoon; G G Privé; D S Goodsell; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

8.  Curved DNA: design, synthesis, and circularization.

Authors:  L Ulanovsky; M Bodner; E N Trifonov; M Choder
Journal:  Proc Natl Acad Sci U S A       Date:  1986-02       Impact factor: 11.205

9.  DNA bending at adenine . thymine tracts.

Authors:  H S Koo; H M Wu; D M Crothers
Journal:  Nature       Date:  1986 Apr 10-16       Impact factor: 49.962

10.  Structural details of an adenine tract that does not cause DNA to bend.

Authors:  A M Burkhoff; T D Tullius
Journal:  Nature       Date:  1988-02-04       Impact factor: 49.962
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  8 in total

1.  Molecular origins of DNA flexibility: sequence effects on conformational and mechanical properties.

Authors:  Vanessa Ortiz; Juan J de Pablo
Journal:  Phys Rev Lett       Date:  2011-06-10       Impact factor: 9.161

2.  Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements.

Authors:  I Brukner; M Dlakic; A Savic; S Susic; S Pongor; D Suck
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

3.  Bending and curvature calculations in B-DNA.

Authors:  D S Goodsell; R E Dickerson
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971

4.  Structural characterization of intrinsically curved AT-rich DNA sequences.

Authors:  P Carrera; F Azorín
Journal:  Nucleic Acids Res       Date:  1994-09-11       Impact factor: 16.971

5.  Centromere parC of plasmid R1 is curved.

Authors:  Christian Hoischen; Alexander Bolshoy; Kenn Gerdes; Stephan Diekmann
Journal:  Nucleic Acids Res       Date:  2004-11-04       Impact factor: 16.971

6.  An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data.

Authors:  Aditi Kanhere; Manju Bansal
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

7.  Repeat units from a maize rDNA external spacer region exhibit DNA curvature and interact with high-mobility-group proteins.

Authors:  E A Griess; K D Grasser; G Feix
Journal:  Planta       Date:  1993       Impact factor: 4.116

8.  Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs.

Authors:  Arvind Marathe; Deepti Karandur; Manju Bansal
Journal:  BMC Struct Biol       Date:  2009-04-24
  8 in total

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