Literature DB >> 23086219

More than the sum of its parts: a complex epistatic network underlies natural variation in thermal preference behavior in Caenorhabditis elegans.

Bryn E Gaertner1, Michelle D Parmenter, Matthew V Rockman, Leonid Kruglyak, Patrick C Phillips.   

Abstract

Behavior is a complex trait that results from interactions among multiple genes and the environment. Both additive and nonadditive effects are expected to contribute to broad-sense heritability of complex phenotypes, although the relative contribution of each of these mechanisms is unknown. Here, we mapped genetic variation in the correlated phenotypes of thermal preference and isothermal dispersion in the nematode Caenorhabditis elegans. Genetic variation underlying these traits is characterized by a set of linked quantitative trait loci (QTL) that interact in a complex epistatic network. In particular, two loci located on the X chromosome interact with one another to generate extreme thermophilic behavior and are responsible for ∼50% of the total variation observed in a cross between two parental lines, even though these loci individually explain very little of the among-line variation. Our results demonstrate that simultaneously considering the influence of a quantitative trait locus (QTL) on multiple scales of behavior can inform the physiological mechanism of the QTL and show that epistasis can explain significant proportions of otherwise unattributed variance within populations.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 23086219      PMCID: PMC3512158          DOI: 10.1534/genetics.112.142877

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  55 in total

1.  Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map.

Authors:  S R Wicks; R T Yeh; W R Gish; R H Waterston; R H Plasterk
Journal:  Nat Genet       Date:  2001-06       Impact factor: 38.330

2.  The mystery of missing heritability: Genetic interactions create phantom heritability.

Authors:  Or Zuk; Eliana Hechter; Shamil R Sunyaev; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-05       Impact factor: 11.205

3.  Modular epistasis in yeast metabolism.

Authors:  Daniel Segrè; Alexander Deluna; George M Church; Roy Kishony
Journal:  Nat Genet       Date:  2004-12-12       Impact factor: 38.330

4.  Outcrossing and the maintenance of males within C. elegans populations.

Authors:  Jennifer L Anderson; Levi T Morran; Patrick C Phillips
Journal:  J Hered       Date:  2010-03-08       Impact factor: 2.645

5.  The fundamental role of pirouettes in Caenorhabditis elegans chemotaxis.

Authors:  J T Pierce-Shimomura; T M Morse; S R Lockery
Journal:  J Neurosci       Date:  1999-11-01       Impact factor: 6.167

Review 6.  Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems.

Authors:  Patrick C Phillips
Journal:  Nat Rev Genet       Date:  2008-11       Impact factor: 53.242

Review 7.  Epistasis and its implications for personal genetics.

Authors:  Jason H Moore; Scott M Williams
Journal:  Am J Hum Genet       Date:  2009-09       Impact factor: 11.025

8.  A novel sperm-delivered toxin causes late-stage embryo lethality and transmission ratio distortion in C. elegans.

Authors:  Hannah S Seidel; Michael Ailion; Jialing Li; Alexander van Oudenaarden; Matthew V Rockman; Leonid Kruglyak
Journal:  PLoS Biol       Date:  2011-07-26       Impact factor: 8.029

9.  Catecholamine receptor polymorphisms affect decision-making in C. elegans.

Authors:  Andres Bendesky; Makoto Tsunozaki; Matthew V Rockman; Leonid Kruglyak; Cornelia I Bargmann
Journal:  Nature       Date:  2011-03-16       Impact factor: 49.962

10.  Does thermoregulatory behavior maximize reproductive fitness of natural isolates of Caenorhabditis elegans?

Authors:  Jennifer L Anderson; Lori Albergotti; Barbara Ellebracht; Raymond B Huey; Patrick C Phillips
Journal:  BMC Evol Biol       Date:  2011-06-06       Impact factor: 3.260

View more
  38 in total

Review 1.  Evolution of Epistatic Networks and the Genetic Basis of Innate Behaviors.

Authors:  Robert R H Anholt
Journal:  Trends Genet       Date:  2019-11-07       Impact factor: 11.639

Review 2.  Cryptic genetic variation: evolution's hidden substrate.

Authors:  Annalise B Paaby; Matthew V Rockman
Journal:  Nat Rev Genet       Date:  2014-03-11       Impact factor: 53.242

Review 3.  The laboratory domestication of Caenorhabditis elegans.

Authors:  Mark G Sterken; L Basten Snoek; Jan E Kammenga; Erik C Andersen
Journal:  Trends Genet       Date:  2015-03-21       Impact factor: 11.639

4.  Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegans.

Authors:  J W M Green; L B Snoek; J E Kammenga; S C Harvey
Journal:  Heredity (Edinb)       Date:  2013-05-29       Impact factor: 3.821

Review 5.  Systems genetics approaches to understand complex traits.

Authors:  Mete Civelek; Aldons J Lusis
Journal:  Nat Rev Genet       Date:  2013-12-03       Impact factor: 53.242

Review 6.  Epistasis and quantitative traits: using model organisms to study gene-gene interactions.

Authors:  Trudy F C Mackay
Journal:  Nat Rev Genet       Date:  2013-12-03       Impact factor: 53.242

7.  Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.

Authors:  Polina Kamkina; L Basten Snoek; Jonas Grossmann; Rita J M Volkers; Mark G Sterken; Michael Daube; Bernd Roschitzki; Claudia Fortes; Ralph Schlapbach; Alexander Roth; Christian von Mering; Michael O Hengartner; Sabine P Schrimpf; Jan E Kammenga
Journal:  Mol Cell Proteomics       Date:  2016-03-04       Impact factor: 5.911

8.  WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.

Authors:  Basten L Snoek; Mark G Sterken; Margi Hartanto; Albert-Jan van Zuilichem; Jan E Kammenga; Dick de Ridder; Harm Nijveen
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

Review 9.  Higher-order genetic interactions and their contribution to complex traits.

Authors:  Matthew B Taylor; Ian M Ehrenreich
Journal:  Trends Genet       Date:  2014-10-02       Impact factor: 11.639

Review 10.  From QTL to gene: C. elegans facilitates discoveries of the genetic mechanisms underlying natural variation.

Authors:  Kathryn S Evans; Marijke H van Wijk; Patrick T McGrath; Erik C Andersen; Mark G Sterken
Journal:  Trends Genet       Date:  2021-07-03       Impact factor: 11.639

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.