Literature DB >> 25284288

Higher-order genetic interactions and their contribution to complex traits.

Matthew B Taylor1, Ian M Ehrenreich2.   

Abstract

The contribution of genetic interactions involving three or more loci to complex traits is poorly understood. These higher-order genetic interactions (HGIs) are difficult to detect in genetic mapping studies, therefore, few examples of them have been described. However, the lack of data on HGIs should not be misconstrued as proof that this class of genetic effect is unimportant. To the contrary, evidence from model organisms suggests that HGIs frequently influence genetic studies and contribute to many complex traits. Here, we review the growing literature on HGIs and discuss the future of research on this topic.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  complex traits; epistasis; genetic interactions; higher-order epistasis; higher-order genetic interactions

Mesh:

Year:  2014        PMID: 25284288      PMCID: PMC4281285          DOI: 10.1016/j.tig.2014.09.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  91 in total

Review 1.  Principles for the buffering of genetic variation.

Authors:  J L Hartman; B Garvik; L Hartwell
Journal:  Science       Date:  2001-02-09       Impact factor: 47.728

2.  The mystery of missing heritability: Genetic interactions create phantom heritability.

Authors:  Or Zuk; Eliana Hechter; Shamil R Sunyaev; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-05       Impact factor: 11.205

3.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.

Authors:  R W Michelmore; I Paran; R V Kesseli
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

4.  Epistasis and the release of genetic variation during long-term selection.

Authors:  Orjan Carlborg; Lina Jacobsson; Per Ahgren; Paul Siegel; Leif Andersson
Journal:  Nat Genet       Date:  2006-03-12       Impact factor: 38.330

5.  A century after Fisher: time for a new paradigm in quantitative genetics.

Authors:  Ronald M Nelson; Mats E Pettersson; Örjan Carlborg
Journal:  Trends Genet       Date:  2013-10-23       Impact factor: 11.639

6.  Who's afraid of epistasis?

Authors:  W N Frankel; N J Schork
Journal:  Nat Genet       Date:  1996-12       Impact factor: 38.330

7.  Targeted disruption of mouse EGF receptor: effect of genetic background on mutant phenotype.

Authors:  D W Threadgill; A A Dlugosz; L A Hansen; T Tennenbaum; U Lichti; D Yee; C LaMantia; T Mourton; K Herrup; R C Harris
Journal:  Science       Date:  1995-07-14       Impact factor: 47.728

Review 8.  Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems.

Authors:  Patrick C Phillips
Journal:  Nat Rev Genet       Date:  2008-11       Impact factor: 53.242

9.  Genetic analysis of variation in transcription factor binding in yeast.

Authors:  Wei Zheng; Hongyu Zhao; Eugenio Mancera; Lars M Steinmetz; Michael Snyder
Journal:  Nature       Date:  2010-03-17       Impact factor: 49.962

10.  Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Authors:  Susanna Atwell; Yu S Huang; Bjarni J Vilhjálmsson; Glenda Willems; Matthew Horton; Yan Li; Dazhe Meng; Alexander Platt; Aaron M Tarone; Tina T Hu; Rong Jiang; N Wayan Muliyati; Xu Zhang; Muhammad Ali Amer; Ivan Baxter; Benjamin Brachi; Joanne Chory; Caroline Dean; Marilyne Debieu; Juliette de Meaux; Joseph R Ecker; Nathalie Faure; Joel M Kniskern; Jonathan D G Jones; Todd Michael; Adnane Nemri; Fabrice Roux; David E Salt; Chunlao Tang; Marco Todesco; M Brian Traw; Detlef Weigel; Paul Marjoram; Justin O Borevitz; Joy Bergelson; Magnus Nordborg
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

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  56 in total

1.  Mapping a diversity of genetic interactions in yeast.

Authors:  Jolanda van Leeuwen; Charles Boone; Brenda J Andrews
Journal:  Curr Opin Syst Biol       Date:  2017-08-12

2.  Spiraling Complexity: A Test of the Snowball Effect in a Computational Model of RNA Folding.

Authors:  Ata Kalirad; Ricardo B R Azevedo
Journal:  Genetics       Date:  2016-12-22       Impact factor: 4.562

3.  Scalable Nonparametric Prescreening Method for Searching Higher-Order Genetic Interactions Underlying Quantitative Traits.

Authors:  Juho A J Kontio; Mikko J Sillanpää
Journal:  Genetics       Date:  2019-10-04       Impact factor: 4.562

4.  Oligogenic inheritance of a human heart disease involving a genetic modifier.

Authors:  Casey A Gifford; Sanjeev S Ranade; Ryan Samarakoon; Hazel T Salunga; T Yvanka de Soysa; Yu Huang; Ping Zhou; Aryé Elfenbein; Stacia K Wyman; Yen Kim Bui; Kimberly R Cordes Metzler; Philip Ursell; Kathryn N Ivey; Deepak Srivastava
Journal:  Science       Date:  2019-05-30       Impact factor: 47.728

Review 5.  Genetic suppression: Extending our knowledge from lab experiments to natural populations.

Authors:  Takeshi Matsui; Jonathan T Lee; Ian M Ehrenreich
Journal:  Bioessays       Date:  2017-05-04       Impact factor: 4.345

6.  Systematic analysis of complex genetic interactions.

Authors:  Elena Kuzmin; Benjamin VanderSluis; Wen Wang; Guihong Tan; Raamesh Deshpande; Yiqun Chen; Matej Usaj; Attila Balint; Mojca Mattiazzi Usaj; Jolanda van Leeuwen; Elizabeth N Koch; Carles Pons; Andrius J Dagilis; Michael Pryszlak; Jason Zi Yang Wang; Julia Hanchard; Margot Riggi; Kaicong Xu; Hamed Heydari; Bryan-Joseph San Luis; Ermira Shuteriqi; Hongwei Zhu; Nydia Van Dyk; Sara Sharifpoor; Michael Costanzo; Robbie Loewith; Amy Caudy; Daniel Bolnick; Grant W Brown; Brenda J Andrews; Charles Boone; Chad L Myers
Journal:  Science       Date:  2018-04-20       Impact factor: 47.728

Review 7.  Mechanisms of suppression: The wiring of genetic resilience.

Authors:  Jolanda van Leeuwen; Carles Pons; Charles Boone; Brenda J Andrews
Journal:  Bioessays       Date:  2017-06-05       Impact factor: 4.345

Review 8.  Decanalizing thinking on genetic canalization.

Authors:  Kerry Geiler-Samerotte; Federica M O Sartori; Mark L Siegal
Journal:  Semin Cell Dev Biol       Date:  2018-05-24       Impact factor: 7.727

9.  Time-resolved mapping of genetic interactions to model rewiring of signaling pathways.

Authors:  Florian Heigwer; Christian Scheeder; Thilo Miersch; Barbara Schmitt; Claudia Blass; Mischan Vali Pour Jamnani; Michael Boutros
Journal:  Elife       Date:  2018-12-28       Impact factor: 8.140

Review 10.  Mechanisms of tissue and cell-type specificity in heritable traits and diseases.

Authors:  Idan Hekselman; Esti Yeger-Lotem
Journal:  Nat Rev Genet       Date:  2020-01-08       Impact factor: 53.242

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