Literature DB >> 25804345

The laboratory domestication of Caenorhabditis elegans.

Mark G Sterken1, L Basten Snoek2, Jan E Kammenga3, Erik C Andersen4.   

Abstract

Model organisms are of great importance to our understanding of basic biology and to making advances in biomedical research. However, the influence of laboratory cultivation on these organisms is underappreciated, and especially how that environment can affect research outcomes. Recent experiments led to insights into how the widely used laboratory reference strain of the nematode Caenorhabditis elegans compares with natural strains. Here we describe potential selective pressures that led to the fixation of laboratory-derived alleles for the genes npr-1, glb-5, and nath-10. These alleles influence a large number of traits, resulting in behaviors that affect experimental interpretations. Furthermore, strong phenotypic effects caused by these laboratory-derived alleles hinder the discovery of natural alleles. We highlight strategies to reduce the influence of laboratory-derived alleles and to harness the full power of C. elegans.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Caenorhabditis elegans; aerotaxis; laboratory derived; npr-1; selection

Mesh:

Year:  2015        PMID: 25804345      PMCID: PMC4417040          DOI: 10.1016/j.tig.2015.02.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  72 in total

1.  The natural history of Caenorhabditis elegans research.

Authors:  R A Ankeny
Journal:  Nat Rev Genet       Date:  2001-06       Impact factor: 53.242

2.  Environmental influence on the genetic correlations between life-history traits in Caenorhabditis elegans.

Authors:  E W Gutteling; A Doroszuk; J A G Riksen; Z Prokop; J Reszka; J E Kammenga
Journal:  Heredity (Edinb)       Date:  2007-01-03       Impact factor: 3.821

3.  Review of the results from the International C. elegans first experiment (ICE-FIRST).

Authors:  A A Adenle; B Johnsen; N J Szewczyk
Journal:  Adv Space Res       Date:  2009-07-15       Impact factor: 2.152

Review 4.  β-catenin-dependent Wnt signaling in C. elegans: teaching an old dog a new trick.

Authors:  Belinda M Jackson; David M Eisenmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-08-01       Impact factor: 10.005

5.  Catecholamine receptor polymorphisms affect decision-making in C. elegans.

Authors:  Andres Bendesky; Makoto Tsunozaki; Matthew V Rockman; Leonid Kruglyak; Cornelia I Bargmann
Journal:  Nature       Date:  2011-03-16       Impact factor: 49.962

6.  Role of pleiotropy in the evolution of a cryptic developmental variation in Caenorhabditis elegans.

Authors:  Fabien Duveau; Marie-Anne Félix
Journal:  PLoS Biol       Date:  2012-01-03       Impact factor: 8.029

7.  Gene-environment and protein-degradation signatures characterize genomic and phenotypic diversity in wild Caenorhabditis elegans populations.

Authors:  Rita J M Volkers; L Basten Snoek; Caspara J van Hellenberg Hubar; Renata Coopman; Wei Chen; Wentao Yang; Mark G Sterken; Hinrich Schulenburg; Bart P Braeckman; Jan E Kammenga
Journal:  BMC Biol       Date:  2013-08-19       Impact factor: 7.431

8.  Long-range regulatory polymorphisms affecting a GABA receptor constitute a quantitative trait locus (QTL) for social behavior in Caenorhabditis elegans.

Authors:  Andres Bendesky; Jason Pitts; Matthew V Rockman; William C Chen; Man-Wah Tan; Leonid Kruglyak; Cornelia I Bargmann
Journal:  PLoS Genet       Date:  2012-12-20       Impact factor: 5.917

9.  A rapid and massive gene expression shift marking adolescent transition in C. elegans.

Authors:  L Basten Snoek; Mark G Sterken; Rita J M Volkers; Mirre Klatter; Kobus J Bosman; Roel P J Bevers; Joost A G Riksen; Geert Smant; Andrew R Cossins; Jan E Kammenga
Journal:  Sci Rep       Date:  2014-01-28       Impact factor: 4.379

10.  A variant in the neuropeptide receptor npr-1 is a major determinant of Caenorhabditis elegans growth and physiology.

Authors:  Erik C Andersen; Joshua S Bloom; Justin P Gerke; Leonid Kruglyak
Journal:  PLoS Genet       Date:  2014-02-27       Impact factor: 5.917

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  76 in total

1.  Translational Geroscience: From invertebrate models to companion animal and human interventions.

Authors:  Mitchell B Lee; Matt Kaeberlein
Journal:  Transl Med Aging       Date:  2018-08-17

2.  The mutational decay of male-male and hermaphrodite-hermaphrodite competitive fitness in the androdioecious nematode C. elegans.

Authors:  Shu-Dan Yeh; Ayush Shekhar Saxena; Timothy A Crombie; Dorian Feistel; Lindsay M Johnson; Isabel Lam; Jennifer Lam; Sayran Saber; Charles F Baer
Journal:  Heredity (Edinb)       Date:  2017-11-14       Impact factor: 3.821

3.  Natural Variation and Genetic Determinants of Caenorhabditis elegans Sperm Size.

Authors:  Anne Vielle; Clotilde Gimond; Nuno Silva-Soares; Stefan Zdraljevic; Patrick T McGrath; Erik C Andersen; Christian Braendle
Journal:  Genetics       Date:  2019-08-08       Impact factor: 4.562

Review 4.  The Power of Natural Variation for Model Organism Biology.

Authors:  Audrey P Gasch; Bret A Payseur; John E Pool
Journal:  Trends Genet       Date:  2016-01-07       Impact factor: 11.639

5.  Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.

Authors:  Polina Kamkina; L Basten Snoek; Jonas Grossmann; Rita J M Volkers; Mark G Sterken; Michael Daube; Bernd Roschitzki; Claudia Fortes; Ralph Schlapbach; Alexander Roth; Christian von Mering; Michael O Hengartner; Sabine P Schrimpf; Jan E Kammenga
Journal:  Mol Cell Proteomics       Date:  2016-03-04       Impact factor: 5.911

6.  Evolution of Yin and Yang isoforms of a chromatin remodeling subunit precedes the creation of two genes.

Authors:  Wen Xu; Lijiang Long; Yuehui Zhao; Lewis Stevens; Irene Felipe; Javier Munoz; Ronald E Ellis; Patrick T McGrath
Journal:  Elife       Date:  2019-09-09       Impact factor: 8.140

7.  WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.

Authors:  Basten L Snoek; Mark G Sterken; Margi Hartanto; Albert-Jan van Zuilichem; Jan E Kammenga; Dick de Ridder; Harm Nijveen
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

Review 8.  Complementary Approaches with Free-living and Parasitic Nematodes to Understanding Anthelmintic Resistance.

Authors:  Janneke Wit; Clayton M Dilks; Erik C Andersen
Journal:  Trends Parasitol       Date:  2020-12-13

9.  Isolating Caenorhabditis elegans from the Natural Habitat.

Authors:  Clotilde Gimond; Nausicaa Poullet; Christian Braendle
Journal:  Methods Mol Biol       Date:  2022

Review 10.  From QTL to gene: C. elegans facilitates discoveries of the genetic mechanisms underlying natural variation.

Authors:  Kathryn S Evans; Marijke H van Wijk; Patrick T McGrath; Erik C Andersen; Mark G Sterken
Journal:  Trends Genet       Date:  2021-07-03       Impact factor: 11.639

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