Literature DB >> 23026907

Engineering designer transcription activator-like effector nucleases (TALENs) by REAL or REAL-Fast assembly.

Deepak Reyon1, Cyd Khayter, Maureen R Regan, J Keith Joung, Jeffry D Sander.   

Abstract

Engineered transcription activator-like effector nucleases (TALENs) are broadly useful tools for performing targeted genome editing in a wide variety of organisms and cell types including plants, zebrafish, C. elegans, rat, human somatic cells, and human pluripotent stem cells. Here we describe detailed protocols for the serial, hierarchical assembly of TALENs that require neither PCR nor specialized multi-fragment ligations and that can be implemented by any laboratory. These restriction enzyme and ligation (REAL)-based protocols can be practiced using plasmid libraries and user-friendly, Web-based software that both identifies target sites in sequences of interest and generates printable graphical guides that facilitate assembly of TALENs. With the described platform of reagents, protocols, and software, researchers can easily engineer multiple TALENs within 2 weeks using standard cloning techniques. 2012 by John Wiley & Sons, Inc.

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Year:  2012        PMID: 23026907      PMCID: PMC3753116          DOI: 10.1002/0471142727.mb1215s100

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  27 in total

1.  Targeting DNA double-strand breaks with TAL effector nucleases.

Authors:  Michelle Christian; Tomas Cermak; Erin L Doyle; Clarice Schmidt; Feng Zhang; Aaron Hummel; Adam J Bogdanove; Daniel F Voytas
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

Review 2.  TAL effectors: finding plant genes for disease and defense.

Authors:  Adam J Bogdanove; Sebastian Schornack; Thomas Lahaye
Journal:  Curr Opin Plant Biol       Date:  2010-06-01       Impact factor: 7.834

3.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

4.  De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks.

Authors:  Magdy M Mahfouz; Lixin Li; Md Shamimuzzaman; Anjar Wibowo; Xiaoyun Fang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-24       Impact factor: 11.205

5.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

Review 6.  TAL effectors: customizable proteins for DNA targeting.

Authors:  Adam J Bogdanove; Daniel F Voytas
Journal:  Science       Date:  2011-09-30       Impact factor: 47.728

7.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

8.  Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.

Authors:  Morgan L Maeder; Stacey Thibodeau-Beganny; Anna Osiak; David A Wright; Reshma M Anthony; Magdalena Eichtinger; Tao Jiang; Jonathan E Foley; Ronnie J Winfrey; Jeffrey A Townsend; Erica Unger-Wallace; Jeffry D Sander; Felix Müller-Lerch; Fengli Fu; Joseph Pearlberg; Carl Göbel; Justin P Dassie; Shondra M Pruett-Miller; Matthew H Porteus; Dennis C Sgroi; A John Iafrate; Drena Dobbs; Paul B McCray; Toni Cathomen; Daniel F Voytas; J Keith Joung
Journal:  Mol Cell       Date:  2008-07-25       Impact factor: 17.970

9.  TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain.

Authors:  Ting Li; Sheng Huang; Wen Zhi Jiang; David Wright; Martin H Spalding; Donald P Weeks; Bing Yang
Journal:  Nucleic Acids Res       Date:  2010-08-10       Impact factor: 16.971

10.  Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription.

Authors:  Feng Zhang; Le Cong; Simona Lodato; Sriram Kosuri; George M Church; Paola Arlotta
Journal:  Nat Biotechnol       Date:  2011-01-19       Impact factor: 54.908

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  38 in total

1.  Nfe2 is dispensable for early but required for adult thrombocyte formation and function in zebrafish.

Authors:  Megan S Rost; Ilya Shestopalov; Yang Liu; Andy H Vo; Catherine E Richter; Sylvia M Emly; Francesca G Barrett; David L Stachura; Michael Holinstat; Leonard I Zon; Jordan A Shavit
Journal:  Blood Adv       Date:  2018-12-11

Review 2.  Targeted genome modification technologies and their applications in crop improvements.

Authors:  Kunling Chen; Caixia Gao
Journal:  Plant Cell Rep       Date:  2013-11-24       Impact factor: 4.570

Review 3.  Gene-edited CRISPy Critters for alcohol research.

Authors:  Gregg E Homanics
Journal:  Alcohol       Date:  2018-03-07       Impact factor: 2.405

4.  A micropeptide encoded by a putative long noncoding RNA regulates muscle performance.

Authors:  Douglas M Anderson; Kelly M Anderson; Chi-Lun Chang; Catherine A Makarewich; Benjamin R Nelson; John R McAnally; Prasad Kasaragod; John M Shelton; Jen Liou; Rhonda Bassel-Duby; Eric N Olson
Journal:  Cell       Date:  2015-01-29       Impact factor: 41.582

Review 5.  Targeted genome engineering techniques in Drosophila.

Authors:  Kelly J Beumer; Dana Carroll
Journal:  Methods       Date:  2014-01-08       Impact factor: 3.608

6.  Context and number of noncanonical repeat variable diresidues impede the design of TALE proteins with improved DNA targeting.

Authors:  James T Anderson; Julia M Rogers; Luis A Barrera; Martha L Bulyk
Journal:  Protein Sci       Date:  2019-12-24       Impact factor: 6.725

Review 7.  Genetically engineered humanized mouse models for preclinical antibody studies.

Authors:  Gabriele Proetzel; Michael V Wiles; Derry C Roopenian
Journal:  BioDrugs       Date:  2014-04       Impact factor: 5.807

8.  Engineering customized TALE nucleases (TALENs) and TALE transcription factors by fast ligation-based automatable solid-phase high-throughput (FLASH) assembly.

Authors:  Deepak Reyon; Morgan L Maeder; Cyd Khayter; Shengdar Q Tsai; Jonathan E Foley; Jeffry D Sander; J Keith Joung
Journal:  Curr Protoc Mol Biol       Date:  2013-07

Review 9.  Zebrafish as a disease model for studying human hepatocellular carcinoma.

Authors:  Jeng-Wei Lu; Yi-Jung Ho; Yi-Ju Yang; Heng-An Liao; Shih-Ci Ciou; Liang-In Lin; Da-Liang Ou
Journal:  World J Gastroenterol       Date:  2015-11-14       Impact factor: 5.742

10.  Methods for targeted mutagenesis in zebrafish using TALENs.

Authors:  Woong Y Hwang; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  Methods       Date:  2014-04-18       Impact factor: 3.608

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