Literature DB >> 24747922

Methods for targeted mutagenesis in zebrafish using TALENs.

Woong Y Hwang1, Randall T Peterson2, Jing-Ruey Joanna Yeh3.   

Abstract

The transcription activator-like effector (TALE) nucleases, or TALENs, are customizable restriction enzymes that may be used to induce mutations at nearly any investigator-specified DNA sequence in zebrafish. The DNA-binding specificities of TALENs are determined by a protein array comprised of four types of TALE repeats, where each repeat recognizes a different DNA base. Here, we describe methods for constructing TALEN vectors that have been shown to achieve high success rates and mutation efficiencies in zebrafish. In addition, we discuss simple techniques and protocols that can be used to detect TALEN-induced mutations at almost any genomic locus. These methods should enable zebrafish researchers to quickly generate targeted mutations at their genes-of-interest.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Gene disruption; Gene targeting; Genome engineering; Knockout; Site-specific nuclease; Transcription activator-like effector nuclease; Zebrafish

Mesh:

Substances:

Year:  2014        PMID: 24747922      PMCID: PMC4157959          DOI: 10.1016/j.ymeth.2014.04.009

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  56 in total

1.  Heritable gene targeting in the mouse and rat using a CRISPR-Cas system.

Authors:  Dali Li; Zhongwei Qiu; Yanjiao Shao; Yuting Chen; Yuting Guan; Meizhen Liu; Yongmei Li; Na Gao; Liren Wang; Xiaoling Lu; Yongxiang Zhao; Mingyao Liu
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

2.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

3.  TALEN-mediated precise genome modification by homologous recombination in zebrafish.

Authors:  Yao Zu; Xiangjun Tong; Zhanxiang Wang; Da Liu; Ruochuan Pan; Zhe Li; Yingying Hu; Zhou Luo; Peng Huang; Qian Wu; Zuoyan Zhu; Bo Zhang; Shuo Lin
Journal:  Nat Methods       Date:  2013-02-24       Impact factor: 28.547

4.  Engineering customized TALE nucleases (TALENs) and TALE transcription factors by fast ligation-based automatable solid-phase high-throughput (FLASH) assembly.

Authors:  Deepak Reyon; Morgan L Maeder; Cyd Khayter; Shengdar Q Tsai; Jonathan E Foley; Jeffry D Sander; J Keith Joung
Journal:  Curr Protoc Mol Biol       Date:  2013-07

Review 5.  ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.

Authors:  Thomas Gaj; Charles A Gersbach; Carlos F Barbas
Journal:  Trends Biotechnol       Date:  2013-05-09       Impact factor: 19.536

6.  One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering.

Authors:  Haoyi Wang; Hui Yang; Chikdu S Shivalila; Meelad M Dawlaty; Albert W Cheng; Feng Zhang; Rudolf Jaenisch
Journal:  Cell       Date:  2013-05-02       Impact factor: 41.582

7.  Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system.

Authors:  Andrew R Bassett; Charlotte Tibbit; Chris P Ponting; Ji-Long Liu
Journal:  Cell Rep       Date:  2013-07-01       Impact factor: 9.423

8.  Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems.

Authors:  James E DiCarlo; Julie E Norville; Prashant Mali; Xavier Rios; John Aach; George M Church
Journal:  Nucleic Acids Res       Date:  2013-03-04       Impact factor: 16.971

9.  Heritable and precise zebrafish genome editing using a CRISPR-Cas system.

Authors:  Woong Y Hwang; Yanfang Fu; Deepak Reyon; Morgan L Maeder; Prakriti Kaini; Jeffry D Sander; J Keith Joung; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  PLoS One       Date:  2013-07-09       Impact factor: 3.240

10.  Heritable genome editing in C. elegans via a CRISPR-Cas9 system.

Authors:  Ari E Friedland; Yonatan B Tzur; Kevin M Esvelt; Monica P Colaiácovo; George M Church; John A Calarco
Journal:  Nat Methods       Date:  2013-06-30       Impact factor: 28.547

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Authors:  Elizabeth A Harvie; Anna Huttenlocher
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Review 3.  The Zebrafish, an Outstanding Model for Biomedical Research in the Field of Melatonin and Human Diseases.

Authors:  Paula Aranda-Martínez; José Fernández-Martínez; Yolanda Ramírez-Casas; Ana Guerra-Librero; César Rodríguez-Santana; Germaine Escames; Darío Acuña-Castroviejo
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4.  Thiosulfate sulfurtransferase prevents hyperglycemic damage to the zebrafish pronephros in an experimental model for diabetes.

Authors:  Zayana M Al-Dahmani; Xiaogang Li; Lucas M Wiggenhauser; Hannes Ott; Paul D Kruithof; Sergey Lunev; Fernando A Batista; Yang Luo; Amalia M Dolga; Nicholas M Morton; Matthew R Groves; Jens Kroll; Harry van Goor
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5.  An Overview of Zebrafish Modeling Methods in Drug Discovery and Development.

Authors:  Bagher Larijani; Shayesteh Kokabi Hamidpour; Akram Tayanloo-Beik; Ainaz Shahbazbadr; Hanieh Yavari; Nazli Namazi; Mahmood Biglar; Babak Arjmand
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

6.  The AP-1 transcription factor component Fosl2 potentiates the rate of myocardial differentiation from the zebrafish second heart field.

Authors:  Leila Jahangiri; Michka Sharpe; Natasha Novikov; Juan Manuel González-Rosa; Asya Borikova; Kathleen Nevis; Noelle Paffett-Lugassy; Long Zhao; Meghan Adams; Burcu Guner-Ataman; Caroline E Burns; C Geoffrey Burns
Journal:  Development       Date:  2016-01-01       Impact factor: 6.868

Review 7.  The zebrafish eye-a paradigm for investigating human ocular genetics.

Authors:  R Richardson; D Tracey-White; A Webster; M Moosajee
Journal:  Eye (Lond)       Date:  2016-09-09       Impact factor: 3.775

8.  Use of transcription activator-like effector for efficient gene modification and transcription in the filamentous fungus Trichoderma reesei.

Authors:  Pei Liu; Wei Wang; Dongzhi Wei
Journal:  J Ind Microbiol Biotechnol       Date:  2017-07-03       Impact factor: 3.346

9.  Methods to study maternal regulation of germ cell specification in zebrafish.

Authors:  O H Kaufman; F L Marlow
Journal:  Methods Cell Biol       Date:  2016-03-02       Impact factor: 1.441

Review 10.  Advancing Diabetic Retinopathy Research: Analysis of the Neurovascular Unit in Zebrafish.

Authors:  Chiara Simone Middel; Hans-Peter Hammes; Jens Kroll
Journal:  Cells       Date:  2021-05-25       Impact factor: 6.600

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