Literature DB >> 24412316

Targeted genome engineering techniques in Drosophila.

Kelly J Beumer1, Dana Carroll2.   

Abstract

For a century, Drosophila has been a favored organism for genetic research. However, the array of materials and methods available to the Drosophila worker has expanded dramatically in the last decade. The most common gene targeting tools, zinc finger nucleases, TALENs, and RNA-guided CRISPR/Cas9, have all been adapted for use in Drosophila, both for simple mutagenesis and for gene editing via homologous recombination. For each tool, there exist a number of web sites, design applications, and delivery methods. The successful application of any of these tools also requires an understanding of methods for detecting successful genome modifications. This article provides an overview of the available gene targeting tools and their application in Drosophila. In lieu of simply providing a protocol for gene targeting, we direct the researcher to resources that will allow access to the latest research in this rapidly evolving field.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; Drosophila; Gene targeting; Homologous recombination; NHEJ; Nuclease; TALEN; Zinc finger nuclease

Mesh:

Year:  2014        PMID: 24412316      PMCID: PMC4048800          DOI: 10.1016/j.ymeth.2013.12.002

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  98 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Targeted gene replacement in Drosophila via P element-induced gap repair.

Authors:  G B Gloor; N A Nassif; D M Johnson-Schlitz; C R Preston; W R Engels
Journal:  Science       Date:  1991-09-06       Impact factor: 47.728

3.  Transposition of cloned P elements into Drosophila germ line chromosomes.

Authors:  A C Spradling; G M Rubin
Journal:  Science       Date:  1982-10-22       Impact factor: 47.728

4.  Efficient gene targeting in Drosophila with zinc-finger nucleases.

Authors:  Kelly Beumer; Gargi Bhattacharyya; Marina Bibikova; Jonathan K Trautman; Dana Carroll
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

5.  Enhanced efficiency of human pluripotent stem cell genome editing through replacing TALENs with CRISPRs.

Authors:  Qiurong Ding; Stephanie N Regan; Yulei Xia; Leoníe A Oostrom; Chad A Cowan; Kiran Musunuru
Journal:  Cell Stem Cell       Date:  2013-04-04       Impact factor: 24.633

6.  Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Authors:  Lindsay Cade; Deepak Reyon; Woong Y Hwang; Shengdar Q Tsai; Samir Patel; Cyd Khayter; J Keith Joung; Jeffry D Sander; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

7.  Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes.

Authors:  Ting Li; Sheng Huang; Xuefeng Zhao; David A Wright; Susan Carpenter; Martin H Spalding; Donald P Weeks; Bing Yang
Journal:  Nucleic Acids Res       Date:  2011-03-31       Impact factor: 16.971

8.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

9.  A simplified and efficient germline-specific CRISPR/Cas9 system for Drosophila genomic engineering.

Authors:  Zachary L Sebo; Han B Lee; Ying Peng; Yi Guo
Journal:  Fly (Austin)       Date:  2013-10-18       Impact factor: 2.160

10.  A guide RNA sequence design platform for the CRISPR/Cas9 system for model organism genomes.

Authors:  Ming Ma; Adam Y Ye; Weiguo Zheng; Lei Kong
Journal:  Biomed Res Int       Date:  2013-10-03       Impact factor: 3.411

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  29 in total

1.  Genome editing technologies: defining a path to clinic.

Authors:  Jacqueline Corrigan-Curay; Marina O'Reilly; Donald B Kohn; Paula M Cannon; Gang Bao; Frederic D Bushman; Dana Carroll; Toni Cathomen; J Keith Joung; David Roth; Michel Sadelain; Andrew M Scharenberg; Christof von Kalle; Feng Zhang; Robert Jambou; Eugene Rosenthal; Morad Hassani; Aparna Singh; Matthew H Porteus
Journal:  Mol Ther       Date:  2015-05       Impact factor: 11.454

2.  A Short History and Description of Drosophila melanogaster Classical Genetics: Chromosome Aberrations, Forward Genetic Screens, and the Nature of Mutations.

Authors:  Thomas C Kaufman
Journal:  Genetics       Date:  2017-06       Impact factor: 4.562

Review 3.  The use of non-rodent model species in microbiota studies.

Authors:  Aaron C Ericsson
Journal:  Lab Anim       Date:  2019-06       Impact factor: 2.471

4.  Reproductive hacking. A male seminal protein acts through intact reproductive pathways in female Drosophila.

Authors:  C Dustin Rubinstein; Mariana F Wolfner
Journal:  Fly (Austin)       Date:  2014       Impact factor: 2.160

Review 5.  RNAi screening in Drosophila cells and in vivo.

Authors:  Stephanie E Mohr
Journal:  Methods       Date:  2014-02-24       Impact factor: 3.608

6.  Genetics on the Fly: A Primer on the Drosophila Model System.

Authors:  Karen G Hales; Christopher A Korey; Amanda M Larracuente; David M Roberts
Journal:  Genetics       Date:  2015-11       Impact factor: 4.562

Review 7.  Genome engineering: Drosophila melanogaster and beyond.

Authors:  Koen J T Venken; Alejandro Sarrion-Perdigones; Paul J Vandeventer; Nicholas S Abel; Audrey E Christiansen; Kristi L Hoffman
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-10-08       Impact factor: 5.814

8.  Genome engineering with TALENs and ZFNs: repair pathways and donor design.

Authors:  Dana Carroll; Kelly J Beumer
Journal:  Methods       Date:  2014-04-02       Impact factor: 3.608

9.  Multiplexed drug-based selection and counterselection genetic manipulations in Drosophila.

Authors:  Nick Matinyan; Mansi S Karkhanis; Yezabel Gonzalez; Antrix Jain; Alexander Saltzman; Anna Malovannaya; Alejandro Sarrion-Perdigones; Herman A Dierick; Koen J T Venken
Journal:  Cell Rep       Date:  2021-09-14       Impact factor: 9.423

10.  Recent insights into Groucho co-repressor recruitment and function.

Authors:  Aamna K Kaul; Eugene F Schuster; Barbara H Jennings
Journal:  Transcription       Date:  2015-01-20
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