Literature DB >> 18657511

Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.

Morgan L Maeder1, Stacey Thibodeau-Beganny, Anna Osiak, David A Wright, Reshma M Anthony, Magdalena Eichtinger, Tao Jiang, Jonathan E Foley, Ronnie J Winfrey, Jeffrey A Townsend, Erica Unger-Wallace, Jeffry D Sander, Felix Müller-Lerch, Fengli Fu, Joseph Pearlberg, Carl Göbel, Justin P Dassie, Shondra M Pruett-Miller, Matthew H Porteus, Dennis C Sgroi, A John Iafrate, Drena Dobbs, Paul B McCray, Toni Cathomen, Daniel F Voytas, J Keith Joung.   

Abstract

Custom-made zinc-finger nucleases (ZFNs) can induce targeted genome modifications with high efficiency in cell types including Drosophila, C. elegans, plants, and humans. A bottleneck in the application of ZFN technology has been the generation of highly specific engineered zinc-finger arrays. Here we describe OPEN (Oligomerized Pool ENgineering), a rapid, publicly available strategy for constructing multifinger arrays, which we show is more effective than the previously published modular assembly method. We used OPEN to construct 37 highly active ZFN pairs which induced targeted alterations with high efficiencies (1%-50%) at 11 different target sites located within three endogenous human genes (VEGF-A, HoxB13, and CFTR), an endogenous plant gene (tobacco SuRA), and a chromosomally integrated EGFP reporter gene. In summary, OPEN provides an "open-source" method for rapidly engineering highly active zinc-finger arrays, thereby enabling broader practice, development, and application of ZFN technology for biological research and gene therapy.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18657511      PMCID: PMC2535758          DOI: 10.1016/j.molcel.2008.06.016

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  38 in total

1.  A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions.

Authors:  J K Joung; E I Ramm; C O Pabo
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Validated zinc finger protein designs for all 16 GNN DNA triplet targets.

Authors:  Qiang Liu; ZhenQin Xia; Xiaohong Zhong; Casey C Case
Journal:  J Biol Chem       Date:  2001-11-28       Impact factor: 5.157

Review 3.  Engineering polydactyl zinc-finger transcription factors.

Authors:  Roger R Beerli; Carlos F Barbas
Journal:  Nat Biotechnol       Date:  2002-02       Impact factor: 54.908

4.  Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes.

Authors:  S A Wolfe; R A Grant; M Elrod-Erickson; C O Pabo
Journal:  Structure       Date:  2001-08       Impact factor: 5.006

5.  Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins.

Authors:  David J Segal; Roger R Beerli; Pilar Blancafort; Birgit Dreier; Karin Effertz; Adrian Huber; Beate Koksch; Caren V Lund; Laurent Magnenat; David Valente; Carlos F Barbas
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

6.  Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases.

Authors:  Marina Bibikova; Mary Golic; Kent G Golic; Dana Carroll
Journal:  Genetics       Date:  2002-07       Impact factor: 4.562

7.  Chimeric nucleases stimulate gene targeting in human cells.

Authors:  Matthew H Porteus; David Baltimore
Journal:  Science       Date:  2003-05-02       Impact factor: 47.728

8.  Human zinc fingers as building blocks in the construction of artificial transcription factors.

Authors:  Kwang-Hee Bae; Young Do Kwon; Hyun-Chul Shin; Moon-Sun Hwang; Eun-Hyun Ryu; Kyung-Soon Park; Hyo-Young Yang; Dong-Ki Lee; Yangsoon Lee; Jinwoo Park; Heung Sun Kwon; Hyun-Won Kim; Byung-Il Yeh; Hyean-Woo Lee; Soon Hyung Sohn; Joonho Yoon; Wongi Seol; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2003-02-18       Impact factor: 54.908

9.  Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases.

Authors:  Erica A Moehle; E A Moehle; Jeremy M Rock; J M Rock; Ya-Li Lee; Y L Lee; Yann Jouvenot; Y Jouvenot; Russell C DeKelver; R C Dekelver; Philip D Gregory; P D Gregory; Fyodor D Urnov; F D Urnov; Michael C Holmes; M C Holmes
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

10.  A rapid, generally applicable method to engineer zinc fingers illustrated by targeting the HIV-1 promoter.

Authors:  M Isalan; A Klug; Y Choo
Journal:  Nat Biotechnol       Date:  2001-07       Impact factor: 54.908

View more
  301 in total

Review 1.  Determining the specificities of TALENs, Cas9, and other genome-editing enzymes.

Authors:  Vikram Pattanayak; John P Guilinger; David R Liu
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

Review 2.  Zinc-finger nucleases for somatic gene therapy: the next frontier.

Authors:  Shamim H Rahman; Morgan L Maeder; J Keith Joung; Toni Cathomen
Journal:  Hum Gene Ther       Date:  2011-07-22       Impact factor: 5.695

3.  Zinc-finger nucleases: how to play two good hands.

Authors:  Mark Isalan
Journal:  Nat Methods       Date:  2011-12-28       Impact factor: 28.547

4.  Prediction of DNA-binding specificity in zinc finger proteins.

Authors:  Sumedha Roy; Shayoni Dutta; Kanika Khanna; Shruti Singla; Durai Sundar
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

Review 5.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

6.  Targeting DNA double-strand breaks with TAL effector nucleases.

Authors:  Michelle Christian; Tomas Cermak; Erin L Doyle; Clarice Schmidt; Feng Zhang; Aaron Hummel; Adam J Bogdanove; Daniel F Voytas
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

7.  Zinc finger nuclease-mediated transgene deletion.

Authors:  Joseph F Petolino; Andrew Worden; Krisi Curlee; James Connell; Tonya L Strange Moynahan; Cory Larsen; Sean Russell
Journal:  Plant Mol Biol       Date:  2010-05-08       Impact factor: 4.076

8.  Transient cold shock enhances zinc-finger nuclease-mediated gene disruption.

Authors:  Yannick Doyon; Vivian M Choi; Danny F Xia; Thuy D Vo; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

Review 9.  CRISPR-Cas systems for editing, regulating and targeting genomes.

Authors:  Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-03-02       Impact factor: 54.908

Review 10.  Synthetic biology in mammalian cells: next generation research tools and therapeutics.

Authors:  Florian Lienert; Jason J Lohmueller; Abhishek Garg; Pamela A Silver
Journal:  Nat Rev Mol Cell Biol       Date:  2014-01-17       Impact factor: 94.444

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.