Literature DB >> 24277082

Targeted genome modification technologies and their applications in crop improvements.

Kunling Chen1, Caixia Gao.   

Abstract

Recent advances in genome engineering indicate that innovative crops developed by targeted genome modification (TGM) using site-specific nucleases (SSNs) have the potential to avoid the regulatory issues raised by genetically modified organisms. These powerful SSNs tools, comprising zinc-finger nucleases, transcription activator-like effector nucleases, and clustered regulatory interspaced short palindromic repeats/CRISPR-associated systems, enable precise genome engineering by introducing DNA double-strand breaks that subsequently trigger DNA repair pathways involving either non-homologous end-joining or homologous recombination. Here, we review developments in genome-editing tools, summarize their applications in crop organisms, and discuss future prospects. We also highlight the ability of these tools to create non-transgenic TGM plants for next-generation crop breeding.

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Year:  2013        PMID: 24277082     DOI: 10.1007/s00299-013-1539-6

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  61 in total

1.  Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.

Authors:  David A Wright; Stacey Thibodeau-Beganny; Jeffry D Sander; Ronnie J Winfrey; Andrew S Hirsh; Magdalena Eichtinger; Fengli Fu; Matthew H Porteus; Drena Dobbs; Daniel F Voytas; J Keith Joung
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

Review 2.  TALENs: customizable molecular DNA scissors for genome engineering of plants.

Authors:  Kunling Chen; Caixia Gao
Journal:  J Genet Genomics       Date:  2013-03-26       Impact factor: 4.275

3.  Targeted genome modification of crop plants using a CRISPR-Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Yi Zhang; Kunling Chen; Zhen Liang; Kang Zhang; Jinxing Liu; Jianzhong Jeff Xi; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

4.  RNA-mediated programmable DNA cleavage.

Authors:  Rodolphe Barrangou
Journal:  Nat Biotechnol       Date:  2012-09       Impact factor: 54.908

Review 5.  ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.

Authors:  Thomas Gaj; Charles A Gersbach; Carlos F Barbas
Journal:  Trends Biotechnol       Date:  2013-05-09       Impact factor: 19.536

6.  FLASH assembly of TALENs for high-throughput genome editing.

Authors:  Deepak Reyon; Shengdar Q Tsai; Cyd Khayter; Jennifer A Foden; Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

7.  Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes.

Authors:  Ting Li; Sheng Huang; Xuefeng Zhao; David A Wright; Susan Carpenter; Martin H Spalding; Donald P Weeks; Bing Yang
Journal:  Nucleic Acids Res       Date:  2011-03-31       Impact factor: 16.971

8.  Targeted gene disruption in somatic zebrafish cells using engineered TALENs.

Authors:  Jeffry D Sander; Lindsay Cade; Cyd Khayter; Deepak Reyon; Randall T Peterson; J Keith Joung; Jing-Ruey J Yeh
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

9.  Efficient genome editing in plants using a CRISPR/Cas system.

Authors:  Zhengyan Feng; Botao Zhang; Wona Ding; Xiaodong Liu; Dong-Lei Yang; Pengliang Wei; Fengqiu Cao; Shihua Zhu; Feng Zhang; Yanfei Mao; Jian-Kang Zhu
Journal:  Cell Res       Date:  2013-08-20       Impact factor: 25.617

10.  High-frequency modification of plant genes using engineered zinc-finger nucleases.

Authors:  Jeffrey A Townsend; David A Wright; Ronnie J Winfrey; Fengli Fu; Morgan L Maeder; J Keith Joung; Daniel F Voytas
Journal:  Nature       Date:  2009-04-29       Impact factor: 49.962

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  40 in total

1.  Knock-down of a RING finger gene confers cold tolerance.

Authors:  Huimin Fang; Qingling Meng; Hongsheng Zhang; Ji Huang
Journal:  Bioengineered       Date:  2016       Impact factor: 3.269

2.  Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system.

Authors:  Christopher Brooks; Vladimir Nekrasov; Zachary B Lippman; Joyce Van Eck
Journal:  Plant Physiol       Date:  2014-09-15       Impact factor: 8.340

Review 3.  Progress of targeted genome modification approaches in higher plants.

Authors:  Teodoro Cardi; C Neal Stewart
Journal:  Plant Cell Rep       Date:  2016-03-29       Impact factor: 4.570

Review 4.  The expanding footprint of CRISPR/Cas9 in the plant sciences.

Authors:  Scott M Schaeffer; Paul A Nakata
Journal:  Plant Cell Rep       Date:  2016-04-30       Impact factor: 4.570

5.  Genome editing of bread wheat using biolistic delivery of CRISPR/Cas9 in vitro transcripts or ribonucleoproteins.

Authors:  Zhen Liang; Kunling Chen; Yi Zhang; Jinxing Liu; Kangquan Yin; Jin-Long Qiu; Caixia Gao
Journal:  Nat Protoc       Date:  2018-02-01       Impact factor: 13.491

6.  Genetically Engineered Oil Seed Crops and Novel Terrestrial Nutrients: Ethical Considerations.

Authors:  Chris MacDonald; Stefanie Colombo; Michael T Arts
Journal:  Sci Eng Ethics       Date:  2018-11-21       Impact factor: 3.525

Review 7.  Advances in studies on ion transporters involved in salt tolerance and breeding crop cultivars with high salt tolerance.

Authors:  Lu Huang; De-Zhi Wu; Guo-Ping Zhang
Journal:  J Zhejiang Univ Sci B       Date:  2020-06       Impact factor: 3.066

8.  Optimization of T-DNA configuration with UBIQUITIN10 promoters and tRNA-sgRNA complexes promotes highly efficient genome editing in allotetraploid tobacco.

Authors:  Manoj Kumar; Dana Ayzenshtat; Adar Marko; Samuel Bocobza
Journal:  Plant Cell Rep       Date:  2021-10-08       Impact factor: 4.570

Review 9.  Gene transfer to plants by electroporation: methods and applications.

Authors:  Ibrahim Ilker Ozyigit
Journal:  Mol Biol Rep       Date:  2020-04-02       Impact factor: 2.316

10.  Insights into the genomic evolution of insects from cricket genomes.

Authors:  Guillem Ylla; Taro Nakamura; Takehiko Itoh; Rei Kajitani; Atsushi Toyoda; Sayuri Tomonari; Tetsuya Bando; Yoshiyasu Ishimaru; Takahito Watanabe; Masao Fuketa; Yuji Matsuoka; Austen A Barnett; Sumihare Noji; Taro Mito; Cassandra G Extavour
Journal:  Commun Biol       Date:  2021-06-14
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