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Literature DB >> 23021004

Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges.

Abstract

X-ray free electron lasers (XFELs) are potentially revolutionary X-ray sources because of their very short pulse duration, extreme peak brilliance and high spatial coherence, features that distinguish them from today's synchrotron sources. We review recent time-resolved Laue diffraction and time-resolved wide angle X-ray scattering (WAXS) studies at synchrotron sources, and initial static studies at XFELs. XFELs have the potential to transform the field of time-resolved structural biology, yet many challenges arise in devising and adapting hardware, experimental design and data analysis strategies to exploit their unusual properties. Despite these challenges, we are confident that XFEL sources are poised to shed new light on ultrafast protein reaction dynamics.

Entities: Chemical Disease Species

Mesh：

Year: 2012 PMID： 23021004 PMCID： PMC3520507 DOI： 10.1016/j.sbi.2012.08.006

Source DB: PubMed Journal: Curr Opin Struct Biol ISSN： 0959-440X Impact factor: 6.809

59 in total

1. A molecular movie at 1.8 A resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds.

Authors: Z Ren; B Perman; V Srajer; T Y Teng; C Pradervand; D Bourgeois; F Schotte; T Ursby; R Kort; M Wulff; K Moffat
Journal: Biochemistry Date: 2001-11-20 Impact factor: 3.162

2. Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors: R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal: Nature Date: 2000-08-17 Impact factor: 49.962

3. Diffraction imaging of single particles and biomolecules.

Authors: G Huldt; A Szoke; J Hajdu
Journal: J Struct Biol Date: 2003 Oct-Nov Impact factor: 2.867

4. Visualizing chemical reactions in solution by picosecond x-ray diffraction.

Authors: Anton Plech; Michael Wulff; Savo Bratos; Fabien Mirloup; Rodolphe Vuilleumier; Friedrich Schotte; Philip A Anfinrud
Journal: Phys Rev Lett Date: 2004-03-26 Impact factor: 9.161

5. Time-dependent atomic coordinates for the dissociation of carbon monoxide from myoglobin.

Authors: Roman Aranda; Elena J Levin; Friedrich Schotte; Philip A Anfinrud; George N Phillips
Journal: Acta Crystallogr D Biol Crystallogr Date: 2006-06-20

6. Femtosecond time-delay X-ray holography.

Authors: Henry N Chapman; Stefan P Hau-Riege; Michael J Bogan; Sasa Bajt; Anton Barty; Sébastien Boutet; Stefano Marchesini; Matthias Frank; Bruce W Woods; W Henry Benner; Richard A London; Urs Rohner; Abraham Szöke; Eberhard Spiller; Thomas Möller; Christoph Bostedt; David A Shapiro; Marion Kuhlmann; Rolf Treusch; Elke Plönjes; Florian Burmeister; Magnus Bergh; Carl Caleman; Gösta Huldt; M Marvin Seibert; Janos Hajdu
Journal: Nature Date: 2007-08-09 Impact factor: 49.962

Review 7. Chemical dynamics in proteins: the photoisomerization of retinal in bacteriorhodopsin.

Authors: F Gai; K C Hasson; J C McDonald; P A Anfinrud
Journal: Science Date: 1998-03-20 Impact factor: 47.728

Review 8. Bacteriorhodopsin: a high-resolution structural view of vectorial proton transport.

Authors: Richard Neutze; Eva Pebay-Peyroula; Karl Edman; Antoine Royant; Javier Navarro; Ehud M Landau
Journal: Biochim Biophys Acta Date: 2002-10-11

9. Femtosecond protein nanocrystallography-data analysis methods.

Authors: Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal: Opt Express Date: 2010-03-15 Impact factor: 3.894

Review 10. The integration of macromolecular diffraction data.

Authors: Andrew G W Leslie
Journal: Acta Crystallogr D Biol Crystallogr Date: 2005-12-14

56 in total

1. Interpretation of solution x-ray scattering by explicit-solvent molecular dynamics.

Authors: Po-Chia Chen; Jochen S Hub
Journal: Biophys J Date: 2015-05-19 Impact factor: 4.033

2. In situ serial Laue diffraction on a microfluidic crystallization device.

Authors: Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Robert Henning; Irina Kosheleva; Vukica Srajer; Paul J A Kenis; Zhong Ren
Journal: J Appl Crystallogr Date: 2014-11-18 Impact factor: 3.304

Review 3. Emerging applications of small angle solution scattering in structural biology.

Authors: Barnali N Chaudhuri
Journal: Protein Sci Date: 2015-02-12 Impact factor: 6.725

4. Towards time-resolved serial crystallography in a microfluidic device.

Authors: Ashtamurthy S Pawate; Vukica Šrajer; Jeremy Schieferstein; Sudipto Guha; Robert Henning; Irina Kosheleva; Marius Schmidt; Zhong Ren; Paul J A Kenis; Sarah L Perry
Journal: Acta Crystallogr F Struct Biol Commun Date: 2015-06-27 Impact factor: 1.056

Review 5. X-ray Scattering Studies of Protein Structural Dynamics.

Authors: Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal: Chem Rev Date: 2017-05-30 Impact factor: 60.622

6. Monitoring molecular nonadiabatic dynamics with femtosecond X-ray diffraction.

Authors: Kochise Bennett; Markus Kowalewski; Jérémy R Rouxel; Shaul Mukamel
Journal: Proc Natl Acad Sci U S A Date: 2018-06-11 Impact factor: 11.205

Review 7. The role of small-angle scattering in structure-based screening applications.

Authors: Po-Chia Chen; Janosch Hennig
Journal: Biophys Rev Date: 2018-10-10

8. Detection of Reaction Intermediates in Mg²⁺-Dependent DNA Synthesis and RNA Degradation by Time-Resolved X-Ray Crystallography.

Authors: Nadine L Samara; Yang Gao; Jinjun Wu; Wei Yang
Journal: Methods Enzymol Date: 2017-05-03 Impact factor: 1.600

Review 9. E pluribus unum, no more: from one crystal, many conformations.

Authors: Rahel A Woldeyes; David A Sivak; James S Fraser
Journal: Curr Opin Struct Biol Date: 2014-08-09 Impact factor: 6.809

10. XFELs open a new era in structural chemical biology.

Authors: Petra Fromme
Journal: Nat Chem Biol Date: 2015-12 Impact factor: 15.040