Literature DB >> 14643224

Diffraction imaging of single particles and biomolecules.

G Huldt1, A Szoke, J Hajdu.   

Abstract

Theory predicts that with a very short and very intense X-ray pulse, the image of a single diffraction pattern may be recorded from a large macromolecule, a virus, or a nanocluster of proteins without the need for a crystal. A three-dimensional data set can be assembled from such images when many copies of the molecule are exposed to the beam one by one in random orientations. We outline a method for structure reconstruction from such a data set in which no independent information is available about the orientation of the images. The basic requirement for reconstruction and/or signal averaging is the ability to tell whether two noisy diffraction patterns represent the same view of the sample or two different views. With this knowledge, averaging techniques can be used to enhance the signal and extend the resolution in a redundant data set. Based on statistical properties of the diffraction pattern, we present an analytical solution to the classification problem. The solution connects the number of incident X-ray photons with the particle size and the achievable resolution. The results are surprising in that they show that classification can be done with less than one photon per pixel in the limiting resolution shell, assuming Poisson-type photon noise in the image. The results can also be used to provide criteria for improvements in other image classification procedures, e.g., those used in electron tomography or diffraction.

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Substances:

Year:  2003        PMID: 14643224     DOI: 10.1016/j.jsb.2003.09.025

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  21 in total

1.  Solving X-ray protein structures without a crystal: using X-ray Free Electron Laser, the fourth generation synchrotron light sources.

Authors:  Bo Huang
Journal:  Protein Cell       Date:  2010-11       Impact factor: 14.870

2.  Single mimivirus particles intercepted and imaged with an X-ray laser.

Authors:  M Marvin Seibert; Tomas Ekeberg; Filipe R N C Maia; Martin Svenda; Jakob Andreasson; Olof Jönsson; Duško Odić; Bianca Iwan; Andrea Rocker; Daniel Westphal; Max Hantke; Daniel P DePonte; Anton Barty; Joachim Schulz; Lars Gumprecht; Nicola Coppola; Andrew Aquila; Mengning Liang; Thomas A White; Andrew Martin; Carl Caleman; Stephan Stern; Chantal Abergel; Virginie Seltzer; Jean-Michel Claverie; Christoph Bostedt; John D Bozek; Sébastien Boutet; A Alan Miahnahri; Marc Messerschmidt; Jacek Krzywinski; Garth Williams; Keith O Hodgson; Michael J Bogan; Christina Y Hampton; Raymond G Sierra; Dmitri Starodub; Inger Andersson; Saša Bajt; Miriam Barthelmess; John C H Spence; Petra Fromme; Uwe Weierstall; Richard Kirian; Mark Hunter; R Bruce Doak; Stefano Marchesini; Stefan P Hau-Riege; Matthias Frank; Robert L Shoeman; Lukas Lomb; Sascha W Epp; Robert Hartmann; Daniel Rolles; Artem Rudenko; Carlo Schmidt; Lutz Foucar; Nils Kimmel; Peter Holl; Benedikt Rudek; Benjamin Erk; André Hömke; Christian Reich; Daniel Pietschner; Georg Weidenspointner; Lothar Strüder; Günter Hauser; Hubert Gorke; Joachim Ullrich; Ilme Schlichting; Sven Herrmann; Gerhard Schaller; Florian Schopper; Heike Soltau; Kai-Uwe Kühnel; Robert Andritschke; Claus-Dieter Schröter; Faton Krasniqi; Mario Bott; Sebastian Schorb; Daniela Rupp; Marcus Adolph; Tais Gorkhover; Helmut Hirsemann; Guillaume Potdevin; Heinz Graafsma; Björn Nilsson; Henry N Chapman; Janos Hajdu
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

Review 3.  A minimal view of single-particle imaging with X-ray lasers.

Authors:  N Duane Loh
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

4.  The correlation of single-particle diffraction patterns as a continuous function of particle orientation.

Authors:  Andrew V Martin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

Review 5.  Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges.

Authors:  Richard Neutze; Keith Moffat
Journal:  Curr Opin Struct Biol       Date:  2012-09-25       Impact factor: 6.809

Review 6.  Emerging opportunities in structural biology with X-ray free-electron lasers.

Authors:  Ilme Schlichting; Jianwei Miao
Journal:  Curr Opin Struct Biol       Date:  2012-08-22       Impact factor: 6.809

7.  Solving structure with sparse, randomly-oriented x-ray data.

Authors:  Hugh T Philipp; Kartik Ayyer; Mark W Tate; Veit Elser; Sol M Gruner
Journal:  Opt Express       Date:  2012-06-04       Impact factor: 3.894

8.  Classifying and assembling two-dimensional X-ray laser diffraction patterns of a single particle to reconstruct the three-dimensional diffraction intensity function: resolution limit due to the quantum noise.

Authors:  Atsushi Tokuhisa; Junichiro Taka; Hidetoshi Kono; Nobuhiro Go
Journal:  Acta Crystallogr A       Date:  2012-03-22       Impact factor: 2.290

9.  High-speed classification of coherent X-ray diffraction patterns on the K computer for high-resolution single biomolecule imaging.

Authors:  Atsushi Tokuhisa; Junya Arai; Yasumasa Joti; Yoshiyuki Ohno; Toyohisa Kameyama; Keiji Yamamoto; Masayuki Hatanaka; Balazs Gerofi; Akio Shimada; Motoyoshi Kurokawa; Fumiyoshi Shoji; Kensuke Okada; Takashi Sugimoto; Mitsuhiro Yamaga; Ryotaro Tanaka; Mitsuo Yokokawa; Atsushi Hori; Yutaka Ishikawa; Takaki Hatsui; Nobuhiro Go
Journal:  J Synchrotron Radiat       Date:  2013-10-03       Impact factor: 2.616

10.  Single-molecule imaging with longer X-ray laser pulses.

Authors:  Andrew V Martin; Justine K Corso; Carl Caleman; Nicusor Timneanu; Harry M Quiney
Journal:  IUCrJ       Date:  2015-10-21       Impact factor: 4.769

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