Literature DB >> 22956290

Deterministic versus stochastic cell polarisation through wave-pinning.

Georg R Walther1, Athanasius F M Marée, Leah Edelstein-Keshet, Verônica A Grieneisen.   

Abstract

Cell polarization is an important part of the response of eukaryotic cells to stimuli, and forms a primary step in cell motility, differentiation, and many cellular functions. Among the important biochemical players implicated in the onset of intracellular asymmetries that constitute the early phases of polarization are the Rho GTPases, such as Cdc42, Rac, and Rho, which present high active concentration levels in a spatially localized manner. Rho GTPases exhibit positive feedback-driven interconversion between distinct active and inactive forms, the former residing on the cell membrane, and the latter predominantly in the cytosol. A deterministic model of the dynamics of a single Rho GTPase described earlier by Mori et al. exhibits sustained polarization by a wave-pinning mechanism. It remained, however, unclear how such polarization behaves at typically low cellular concentrations, as stochasticity could significantly affect the dynamics. We therefore study the low copy number dynamics of this model, using a stochastic kinetics framework based on the Gillespie algorithm, and propose statistical and analytic techniques which help us analyse the equilibrium behaviour of our stochastic system. We use local perturbation analysis to predict parameter regimes for initiation of polarity and wave-pinning in our deterministic system, and compare these predictions with deterministic and stochastic spatial simulations. Comparing the behaviour of the stochastic with the deterministic system, we determine the threshold number of molecules required for robust polarization in a given effective reaction volume. We show that when the molecule number is lowered wave-pinning behaviour is lost due to an increasingly large transition zone as well as increasing fluctuations in the pinning position, due to which a broadness can be reached that is unsustainable, causing the collapse of the wave, while the variations in the high and low equilibrium levels are much less affected.

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Year:  2012        PMID: 22956290      PMCID: PMC3480592          DOI: 10.1007/s11538-012-9766-5

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  24 in total

1.  Stochastic focusing: fluctuation-enhanced sensitivity of intracellular regulation.

Authors:  J Paulsson; O G Berg; M Ehrenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  A diffusion-translocation model for gradient sensing by chemotactic cells.

Authors:  M Postma; P J Van Haastert
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

Review 3.  Cell migration: Rho GTPases lead the way.

Authors:  Myrto Raftopoulou; Alan Hall
Journal:  Dev Biol       Date:  2004-01-01       Impact factor: 3.582

4.  Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.

Authors:  Steven S Andrews; Dennis Bray
Journal:  Phys Biol       Date:  2004-12       Impact factor: 2.583

5.  Wave-pinning and cell polarity from a bistable reaction-diffusion system.

Authors:  Yoichiro Mori; Alexandra Jilkine; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

6.  Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.

Authors:  Radek Erban; S Jonathan Chapman
Journal:  Phys Biol       Date:  2009-08-21       Impact factor: 2.583

7.  The influence of volume exclusion by chromatin on the time required to find specific DNA binding sites by diffusion.

Authors:  S A Isaacson; D M McQueen; Charles S Peskin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-07       Impact factor: 11.205

8.  ASYMPTOTIC AND BIFURCATION ANALYSIS OF WAVE-PINNING IN A REACTION-DIFFUSION MODEL FOR CELL POLARIZATION.

Authors:  Yoichiro Mori; Alexandra Jilkine; Leah Edelstein-Keshet
Journal:  SIAM J Appl Math       Date:  2011       Impact factor: 2.080

9.  On the spontaneous emergence of cell polarity.

Authors:  Steven J Altschuler; Sigurd B Angenent; Yanqin Wang; Lani F Wu
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

10.  SIMULATING BIOCHEMICAL SIGNALING NETWORKS IN COMPLEX MOVING GEOMETRIES.

Authors:  Wanda Strychalski; David Adalsteinsson; Timothy C Elston
Journal:  SIAM J Sci Comput       Date:  2010       Impact factor: 2.373

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  14 in total

Review 1.  From simple to detailed models for cell polarization.

Authors:  Leah Edelstein-Keshet; William R Holmes; Mark Zajac; Meghan Dutot
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-09-23       Impact factor: 6.237

2.  Rac activation is key to cell motility and directionality: An experimental and modelling investigation.

Authors:  Jessica K Lyda; Zhang L Tan; Abira Rajah; Asheesh Momi; Laurent Mackay; Claire M Brown; Anmar Khadra
Journal:  Comput Struct Biotechnol J       Date:  2019-11-07       Impact factor: 7.271

3.  Protein abundance may regulate sensitivity to external cues in polarized cells.

Authors:  Marc Sturrock; Adriana T Dawes
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

4.  Mean field analysis of a spatial stochastic model of a gene regulatory network.

Authors:  M Sturrock; P J Murray; A Matzavinos; M A J Chaplain
Journal:  J Math Biol       Date:  2014-10-17       Impact factor: 2.259

5.  Stochastic transitions in a bistable reaction system on the membrane.

Authors:  Marek Kochanczyk; Joanna Jaruszewicz; Tomasz Lipniacki
Journal:  J R Soc Interface       Date:  2013-05-01       Impact factor: 4.118

6.  Membrane Tension Can Enhance Adaptation to Maintain Polarity of Migrating Cells.

Authors:  Cole Zmurchok; Jared Collette; Vijay Rajagopal; William R Holmes
Journal:  Biophys J       Date:  2020-09-07       Impact factor: 4.033

7.  A model for intracellular actin waves explored by nonlinear local perturbation analysis.

Authors:  May Anne Mata; Meghan Dutot; Leah Edelstein-Keshet; William R Holmes
Journal:  J Theor Biol       Date:  2013-07-02       Impact factor: 2.691

8.  Mechanisms of Cell Polarization.

Authors:  Wouter-Jan Rappel; Leah Edelstein-Keshet
Journal:  Curr Opin Syst Biol       Date:  2017-04-12

9.  Modeling Contact Inhibition of Locomotion of Colliding Cells Migrating on Micropatterned Substrates.

Authors:  Dirk Alexander Kulawiak; Brian A Camley; Wouter-Jan Rappel
Journal:  PLoS Comput Biol       Date:  2016-12-16       Impact factor: 4.475

10.  GraTeLPy: graph-theoretic linear stability analysis.

Authors:  Georg R Walther; Matthew Hartley; Maya Mincheva
Journal:  BMC Syst Biol       Date:  2014-02-27
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