Literature DB >> 24062577

From simple to detailed models for cell polarization.

Leah Edelstein-Keshet1, William R Holmes, Mark Zajac, Meghan Dutot.   

Abstract

Many mathematical models have been proposed for the process of cell polarization. Some of these are 'functional models' that capture a class of dynamical behaviour, whereas others are derived from features of signalling molecules. Some mechanistic models are detailed, and therefore complex, whereas others are simplified. Each type contributes to our understanding of cell polarization. However, the huge variety at different levels of detail makes comparisons challenging. Here, we provide examples of both elementary and more detailed models for polarization. We also display how a recent mathematical method, local perturbation analysis, can provide an appropriate tool for such comparisons. This technique simplifies and speeds up the model development process by revealing the effect of model extensions, parameter variations and in silico manipulations such as knock-out or over-expression of key molecules. Finally, simulations in both one dimension and two dimensions, and particularly in deforming two-dimensional 'cells', can highlight behaviour not captured by traditional simulation methods.

Keywords:  cell polarization; mathematical analysis; pattern formation; reaction–diffusion equations

Mesh:

Substances:

Year:  2013        PMID: 24062577      PMCID: PMC3785957          DOI: 10.1098/rstb.2013.0003

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  25 in total

1.  Polarization of PAR proteins by advective triggering of a pattern-forming system.

Authors:  Nathan W Goehring; Philipp Khuc Trong; Justin S Bois; Debanjan Chowdhury; Ernesto M Nicola; Anthony A Hyman; Stephan W Grill
Journal:  Science       Date:  2011-10-20       Impact factor: 47.728

2.  Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk.

Authors:  Alexandra Jilkine; Athanasius F M Marée; Leah Edelstein-Keshet
Journal:  Bull Math Biol       Date:  2007-04-25       Impact factor: 1.758

Review 3.  Cell-signalling dynamics in time and space.

Authors:  Boris N Kholodenko
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

4.  Redundant mechanisms for stable cell locomotion revealed by minimal models.

Authors:  Charles W Wolgemuth; Jelena Stajic; Alex Mogilner
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

5.  Synthetic spatially graded Rac activation drives cell polarization and movement.

Authors:  Benjamin Lin; William R Holmes; C Joanne Wang; Tasuku Ueno; Andrew Harwell; Leah Edelstein-Keshet; Takanari Inoue; Andre Levchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-26       Impact factor: 11.205

6.  Phosphoinositides and Rho proteins spatially regulate actin polymerization to initiate and maintain directed movement in a one-dimensional model of a motile cell.

Authors:  Adriana T Dawes; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

Review 7.  A comparison of mathematical models for polarization of single eukaryotic cells in response to guided cues.

Authors:  Alexandra Jilkine; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2011-04-28       Impact factor: 4.475

8.  How cells integrate complex stimuli: the effect of feedback from phosphoinositides and cell shape on cell polarization and motility.

Authors:  Athanasius F M Marée; Verônica A Grieneisen; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2012-03-01       Impact factor: 4.475

9.  An actin-based wave generator organizes cell motility.

Authors:  Orion D Weiner; William A Marganski; Lani F Wu; Steven J Altschuler; Marc W Kirschner
Journal:  PLoS Biol       Date:  2007-09       Impact factor: 8.029

10.  Deterministic versus stochastic cell polarisation through wave-pinning.

Authors:  Georg R Walther; Athanasius F M Marée; Leah Edelstein-Keshet; Verônica A Grieneisen
Journal:  Bull Math Biol       Date:  2012-09-07       Impact factor: 1.758

View more
  28 in total

1.  Projecting cell polarity into the next decade.

Authors:  Attila Csikász-Nagy; Masamitsu Sato; Rafael E Carazo Salas
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-09-23       Impact factor: 6.237

2.  Rac activation is key to cell motility and directionality: An experimental and modelling investigation.

Authors:  Jessica K Lyda; Zhang L Tan; Abira Rajah; Asheesh Momi; Laurent Mackay; Claire M Brown; Anmar Khadra
Journal:  Comput Struct Biotechnol J       Date:  2019-11-07       Impact factor: 7.271

3.  Targeted Proteomics-Driven Computational Modeling of Macrophage S1P Chemosensing.

Authors:  Nathan P Manes; Bastian R Angermann; Marijke Koppenol-Raab; Eunkyung An; Virginie H Sjoelund; Jing Sun; Masaru Ishii; Ronald N Germain; Martin Meier-Schellersheim; Aleksandra Nita-Lazar
Journal:  Mol Cell Proteomics       Date:  2015-07-21       Impact factor: 5.911

4.  Spatiotemporal dynamics of a reaction-diffusion model of pollen tube tip growth.

Authors:  Chenwei Tian; Qingyan Shi; Xinping Cui; Jingzhe Guo; Zhenbiao Yang; Junping Shi
Journal:  J Math Biol       Date:  2019-07-06       Impact factor: 2.259

5.  Polarity mechanisms such as contact inhibition of locomotion regulate persistent rotational motion of mammalian cells on micropatterns.

Authors:  Brian A Camley; Yunsong Zhang; Yanxiang Zhao; Bo Li; Eshel Ben-Jacob; Herbert Levine; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-25       Impact factor: 11.205

6.  Periodic propagating waves coordinate RhoGTPase network dynamics at the leading and trailing edges during cell migration.

Authors:  Alfonso Bolado-Carrancio; Oleksii S Rukhlenko; Elena Nikonova; Mikhail A Tsyganov; Anne Wheeler; Amaya Garcia-Munoz; Walter Kolch; Alex von Kriegsheim; Boris N Kholodenko
Journal:  Elife       Date:  2020-07-24       Impact factor: 8.140

7.  Membrane Tension Can Enhance Adaptation to Maintain Polarity of Migrating Cells.

Authors:  Cole Zmurchok; Jared Collette; Vijay Rajagopal; William R Holmes
Journal:  Biophys J       Date:  2020-09-07       Impact factor: 4.033

Review 8.  A mathematical model of GTPase pattern formation during single-cell wound repair.

Authors:  William R Holmes; Adriana E Golding; William M Bement; Leah Edelstein-Keshet
Journal:  Interface Focus       Date:  2016-10-06       Impact factor: 3.906

9.  Simple Rho GTPase Dynamics Generate a Complex Regulatory Landscape Associated with Cell Shape.

Authors:  Cole Zmurchok; William R Holmes
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

10.  Mechanisms of Cell Polarization.

Authors:  Wouter-Jan Rappel; Leah Edelstein-Keshet
Journal:  Curr Opin Syst Biol       Date:  2017-04-12
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.