Literature DB >> 23635492

Stochastic transitions in a bistable reaction system on the membrane.

Marek Kochanczyk1, Joanna Jaruszewicz, Tomasz Lipniacki.   

Abstract

Transitions between steady states of a multi-stable stochastic system in the perfectly mixed chemical reactor are possible only because of stochastic switching. In realistic cellular conditions, where diffusion is limited, transitions between steady states can also follow from the propagation of travelling waves. Here, we study the interplay between the two modes of transition for a prototype bistable system of kinase-phosphatase interactions on the plasma membrane. Within microscopic kinetic Monte Carlo simulations on the hexagonal lattice, we observed that for finite diffusion the behaviour of the spatially extended system differs qualitatively from the behaviour of the same system in the well-mixed regime. Even when a small isolated subcompartment remains mostly inactive, the chemical travelling wave may propagate, leading to the activation of a larger compartment. The activating wave can be induced after a small subdomain is activated as a result of a stochastic fluctuation. Such a spontaneous onset of activity is radically more probable in subdomains characterized by slower diffusion. Our results show that a local immobilization of substrates can lead to the global activation of membrane proteins by the mechanism that involves stochastic fluctuations followed by the propagation of a semi-deterministic travelling wave.

Keywords:  Markov process; cell signalling; kinase autophosphorylation; kinetic Monte Carlo on the lattice; multi-stability; spatially extended system

Mesh:

Substances:

Year:  2013        PMID: 23635492      PMCID: PMC3673150          DOI: 10.1098/rsif.2013.0151

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  49 in total

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Authors:  Nick I Markevich; Jan B Hoek; Boris N Kholodenko
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9.  Activation of CaMKII in single dendritic spines during long-term potentiation.

Authors:  Seok-Jin R Lee; Yasmin Escobedo-Lozoya; Erzsebet M Szatmari; Ryohei Yasuda
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  4 in total

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