Literature DB >> 22171122

ASYMPTOTIC AND BIFURCATION ANALYSIS OF WAVE-PINNING IN A REACTION-DIFFUSION MODEL FOR CELL POLARIZATION.

Yoichiro Mori1, Alexandra Jilkine, Leah Edelstein-Keshet.   

Abstract

We describe and analyze a bistable reaction-diffusion (RD) model for two interconverting chemical species that exhibits a phenomenon of wave-pinning: a wave of activation of one of the species is initiated at one end of the domain, moves into the domain, decelerates, and eventually stops inside the domain, forming a stationary front. The second ("inactive") species is depleted in this process. This behavior arises in a model for chemical polarization of a cell by Rho GTPases in response to stimulation. The initially spatially homogeneous concentration profile (representative of a resting cell) develops into an asymmetric stationary front profile (typical of a polarized cell). Wave-pinning here is based on three properties: (1) mass conservation in a finite domain, (2) nonlinear reaction kinetics allowing for multiple stable steady states, and (3) a sufficiently large difference in diffusion of the two species. Using matched asymptotic analysis, we explain the mathematical basis of wave-pinning, and predict the speed and pinned position of the wave. An analysis of the bifurcation of the pinned front solution reveals how the wave-pinning regime depends on parameters such as rates of diffusion and total mass of the species. We describe two ways in which the pinned solution can be lost depending on the details of the reaction kinetics: a saddle-node or a pitchfork bifurcation.

Entities:  

Year:  2011        PMID: 22171122      PMCID: PMC3235655          DOI: 10.1137/10079118X

Source DB:  PubMed          Journal:  SIAM J Appl Math        ISSN: 0036-1399            Impact factor:   2.080


  27 in total

Review 1.  Chemotaxis: signalling modules join hands at front and tail.

Authors:  Marten Postma; Leonard Bosgraaf; Harriët M Loovers; Peter J M Van Haastert
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

2.  Phosphorylation of RhoGDI by Src regulates Rho GTPase binding and cytosol-membrane cycling.

Authors:  Céline DerMardirossian; Gabriel Rocklin; Ji-Yeon Seo; Gary M Bokoch
Journal:  Mol Biol Cell       Date:  2006-08-30       Impact factor: 4.138

3.  Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk.

Authors:  Alexandra Jilkine; Athanasius F M Marée; Leah Edelstein-Keshet
Journal:  Bull Math Biol       Date:  2007-04-25       Impact factor: 1.758

4.  Localized Rac activation dynamics visualized in living cells.

Authors:  V S Kraynov; C Chamberlain; G M Bokoch; M A Schwartz; S Slabaugh; K M Hahn
Journal:  Science       Date:  2000-10-13       Impact factor: 47.728

5.  Phosphoinositides and Rho proteins spatially regulate actin polymerization to initiate and maintain directed movement in a one-dimensional model of a motile cell.

Authors:  Adriana T Dawes; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

6.  On the spontaneous emergence of cell polarity.

Authors:  Steven J Altschuler; Sigurd B Angenent; Yanqin Wang; Lani F Wu
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

7.  A mechanistic model for eukaryotic gradient sensing: spontaneous and induced phosphoinositide polarization.

Authors:  K K Subramanian; Atul Narang
Journal:  J Theor Biol       Date:  2004-11-07       Impact factor: 2.691

8.  Singularity in polarization: rewiring yeast cells to make two buds.

Authors:  Audrey S Howell; Natasha S Savage; Sam A Johnson; Indrani Bose; Allison W Wagner; Trevin R Zyla; H Frederik Nijhout; Michael C Reed; Andrew B Goryachev; Daniel J Lew
Journal:  Cell       Date:  2009-11-13       Impact factor: 41.582

9.  Scaffold-mediated symmetry breaking by Cdc42p.

Authors:  Javier E Irazoqui; Amy S Gladfelter; Daniel J Lew
Journal:  Nat Cell Biol       Date:  2003-11-16       Impact factor: 28.824

10.  An actin-based wave generator organizes cell motility.

Authors:  Orion D Weiner; William A Marganski; Lani F Wu; Steven J Altschuler; Marc W Kirschner
Journal:  PLoS Biol       Date:  2007-09       Impact factor: 8.029

View more
  33 in total

1.  Modeling the Mechanosensitivity of Neutrophils Passing through a Narrow Channel.

Authors:  Tenghu Wu; James J Feng
Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

Review 2.  From simple to detailed models for cell polarization.

Authors:  Leah Edelstein-Keshet; William R Holmes; Mark Zajac; Meghan Dutot
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-09-23       Impact factor: 6.237

3.  Rac activation is key to cell motility and directionality: An experimental and modelling investigation.

Authors:  Jessica K Lyda; Zhang L Tan; Abira Rajah; Asheesh Momi; Laurent Mackay; Claire M Brown; Anmar Khadra
Journal:  Comput Struct Biotechnol J       Date:  2019-11-07       Impact factor: 7.271

4.  Local perturbation analysis: a computational tool for biophysical reaction-diffusion models.

Authors:  William R Holmes; May Anne Mata; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2015-01-20       Impact factor: 4.033

5.  Spatiotemporal dynamics of a reaction-diffusion model of pollen tube tip growth.

Authors:  Chenwei Tian; Qingyan Shi; Xinping Cui; Jingzhe Guo; Zhenbiao Yang; Junping Shi
Journal:  J Math Biol       Date:  2019-07-06       Impact factor: 2.259

6.  Spherical Caps in Cell Polarization.

Authors:  Rocky Diegmiller; Hadrien Montanelli; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2018-06-20       Impact factor: 4.033

7.  Weakly nonlinear analysis of symmetry breaking in cell polarity models.

Authors:  Boris Rubinstein; Brian D Slaughter; Rong Li
Journal:  Phys Biol       Date:  2012-08-07       Impact factor: 2.583

8.  Polarity mechanisms such as contact inhibition of locomotion regulate persistent rotational motion of mammalian cells on micropatterns.

Authors:  Brian A Camley; Yunsong Zhang; Yanxiang Zhao; Bo Li; Eshel Ben-Jacob; Herbert Levine; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-25       Impact factor: 11.205

9.  Membrane Tension Can Enhance Adaptation to Maintain Polarity of Migrating Cells.

Authors:  Cole Zmurchok; Jared Collette; Vijay Rajagopal; William R Holmes
Journal:  Biophys J       Date:  2020-09-07       Impact factor: 4.033

10.  Simple Rho GTPase Dynamics Generate a Complex Regulatory Landscape Associated with Cell Shape.

Authors:  Cole Zmurchok; William R Holmes
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.