Literature DB >> 22956079

Xenopus tropicalis as a model organism for genetics and genomics: past, present, and future.

Robert M Grainger1.   

Abstract

Xenopus tropicalis was introduced as a model system for genetic, and then genomic research, in the early 1990s, complementing work on the widely used model organism Xenopus laevis. Its shorter generation time and diploid genome has facilitated a number of experimental approaches. It has permitted multigenerational experiments (e.g., preparation of transgenic lines and generation of mutant lines) that have added powerful approaches for research by the Xenopus community. As a diploid animal, its simpler genome was sequenced before X. laevis, and has provided a highly valuable resource indispensable for all Xenopus researchers. As more sophisticated transgenic technologies for manipulating gene expression are developed, and mutations, particularly null mutations, are identified in widely studied genes involved in critical cellular and developmental processes, researchers will increasingly turn to X. tropicalis for definitive analysis of complex genetic pathways. This chapter describes the historical and conceptual development of X. tropicalis as a genetic and genomic model system for higher vertebrate development.

Entities:  

Mesh:

Year:  2012        PMID: 22956079      PMCID: PMC3918953          DOI: 10.1007/978-1-61779-992-1_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  42 in total

Review 1.  TILLING--a high-throughput harvest for functional genomics.

Authors:  Derek L Stemple
Journal:  Nat Rev Genet       Date:  2004-02       Impact factor: 53.242

2.  ABSENCE OF RIBOSOMAL RNA SYNTHESIS IN THE ANUCLEOLATE MUTANT OF XENOPUS LAEVIS.

Authors:  D D BROWN; J B GURDON
Journal:  Proc Natl Acad Sci U S A       Date:  1964-01       Impact factor: 11.205

Review 3.  Genetics of Xenopus laevis.

Authors:  J D Graf; H R Kobel
Journal:  Methods Cell Biol       Date:  1991       Impact factor: 1.441

4.  Identification of mutants in inbred Xenopus tropicalis.

Authors:  Timothy C Grammer; Mustafa K Khokha; Maura A Lane; Kentson Lam; Richard M Harland
Journal:  Mech Dev       Date:  2005-03       Impact factor: 1.882

Review 5.  Xenopus research: metamorphosed by genetics and genomics.

Authors:  Richard M Harland; Robert M Grainger
Journal:  Trends Genet       Date:  2011-10-01       Impact factor: 11.639

6.  Techniques and probes for the study of Xenopus tropicalis development.

Authors:  Mustafa K Khokha; Christina Chung; Erika L Bustamante; Lisa W K Gaw; Kristin A Trott; Joanna Yeh; Nancy Lim; Jennifer C Y Lin; Nicola Taverner; Enrique Amaya; Nancy Papalopulu; James C Smith; Aaron M Zorn; Richard M Harland; Timothy C Grammer
Journal:  Dev Dyn       Date:  2002-12       Impact factor: 3.780

7.  Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling.

Authors:  Ryan D Morin; Elbert Chang; Anca Petrescu; Nancy Liao; Malachi Griffith; William Chow; Robert Kirkpatrick; Yaron S Butterfield; Alice C Young; Jeffrey Stott; Sarah Barber; Ryan Babakaiff; Mark C Dickson; Corey Matsuo; David Wong; George S Yang; Duane E Smailus; Keith D Wetherby; Peggy N Kwong; Jane Grimwood; Charles P Brinkley; Mabel Brown-John; Natalie D Reddix-Dugue; Michael Mayo; Jeremy Schmutz; Jaclyn Beland; Morgan Park; Susan Gibson; Teika Olson; Gerard G Bouffard; Miranda Tsai; Ruth Featherstone; Steve Chand; Asim S Siddiqui; Wonhee Jang; Ed Lee; Steven L Klein; Robert W Blakesley; Barry R Zeeberg; Sudarshan Narasimhan; John N Weinstein; Christa Prange Pennacchio; Richard M Myers; Eric D Green; Lukas Wagner; Daniela S Gerhard; Marco A Marra; Steven J M Jones; Robert A Holt
Journal:  Genome Res       Date:  2006-05-03       Impact factor: 9.043

Review 8.  Mouse ENU mutagenesis.

Authors:  M J Justice; J K Noveroske; J S Weber; B Zheng; A Bradley
Journal:  Hum Mol Genet       Date:  1999       Impact factor: 6.150

9.  The first half-century of nuclear transplantation.

Authors:  J B Gurdon; J A Byrne
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-23       Impact factor: 12.779

10.  Absence of heartbeat in the Xenopus tropicalis mutation muzak is caused by a nonsense mutation in cardiac myosin myh6.

Authors:  Anita Abu-Daya; Amy K Sater; Dan E Wells; Timothy J Mohun; Lyle B Zimmerman
Journal:  Dev Biol       Date:  2009-09-19       Impact factor: 3.582

View more
  15 in total

1.  A frog with three sex chromosomes that co-mingle together in nature: Xenopus tropicalis has a degenerate W and a Y that evolved from a Z chromosome.

Authors:  Benjamin L S Furman; Caroline M S Cauret; Martin Knytl; Xue-Ying Song; Tharindu Premachandra; Caleb Ofori-Boateng; Danielle C Jordan; Marko E Horb; Ben J Evans
Journal:  PLoS Genet       Date:  2020-11-09       Impact factor: 5.917

2.  Functional Cloning Using a Xenopus Oocyte Expression System.

Authors:  Carol Zygar Plautz; Hannah C Williams; Robert M Grainger
Journal:  J Vis Exp       Date:  2016-01-30       Impact factor: 1.355

3.  Spindle assembly in egg extracts of the Marsabit clawed frog, Xenopus borealis.

Authors:  Maiko Kitaoka; Rebecca Heald; Romain Gibeaux
Journal:  Cytoskeleton (Hoboken)       Date:  2018-04-17

4.  High-efficiency non-mosaic CRISPR-mediated knock-in and indel mutation in F0 Xenopus.

Authors:  Yetki Aslan; Emmanuel Tadjuidje; Aaron M Zorn; Sang-Wook Cha
Journal:  Development       Date:  2017-07-10       Impact factor: 6.868

5.  Visualization and Quantitative Analysis of Embryonic Angiogenesis in Xenopus tropicalis.

Authors:  Jiyeon Ohk; Hosung Jung
Journal:  J Vis Exp       Date:  2017-05-25       Impact factor: 1.355

Review 6.  Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis.

Authors:  Anneke Kakebeen; Andrea Wills
Journal:  Dev Dyn       Date:  2019-07-09       Impact factor: 3.780

Review 7.  Regulation of organelle size and organization during development.

Authors:  Pan Chen; Daniel L Levy
Journal:  Semin Cell Dev Biol       Date:  2022-02-08       Impact factor: 7.499

Review 8.  Xenopus genomic data and browser resources.

Authors:  Peter D Vize; Aaron M Zorn
Journal:  Dev Biol       Date:  2016-03-31       Impact factor: 3.582

9.  Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS.

Authors:  Anneke Dixie Kakebeen; Alexander Daniel Chitsazan; Andrea Elizabeth Wills
Journal:  Dev Dyn       Date:  2020-11-12       Impact factor: 2.842

10.  Xenbase: expansion and updates of the Xenopus model organism database.

Authors:  Christina James-Zorn; Virgilio G Ponferrada; Chris J Jarabek; Kevin A Burns; Erik J Segerdell; Jacqueline Lee; Kevin Snyder; Bishnu Bhattacharyya; J Brad Karpinka; Joshua Fortriede; Jeff B Bowes; Aaron M Zorn; Peter D Vize
Journal:  Nucleic Acids Res       Date:  2012-11-03       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.