Literature DB >> 26862700

Functional Cloning Using a Xenopus Oocyte Expression System.

Carol Zygar Plautz1, Hannah C Williams2, Robert M Grainger3.   

Abstract

Identification of genes responsible for embryonic induction poses a number of challenges; to name a few, secreted molecules of interest may be low in abundance, may not be secreted but tethered to the signaling cell(s), or may require the presence of binding partners or upstream regulatory molecules. Thus in a search for gene products capable of eliciting an early lens-inductive response in competent ectoderm, we utilized an expression cloning system that would allow identification of paracrine or juxtacrine factors as well as transcriptional or other regulatory proteins. Pools of mRNA were injected into Xenopus oocytes, and responding tissue placed directly on the oocytes and co-cultured. Following functional cloning of ldb1 from a neural plate stage cDNA library based on its ability to elicit the expression of the early lens placode marker foxe3 in lens-competent animal cap ectoderm, we characterized the mRNA expression pattern, and assayed developmental progression following overexpression or knockdown of ldb1. This system is suitable in a very wide variety of contexts where identification of an inducer or its upstream regulatory molecules is sought using a functional response in competent tissue.

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Year:  2016        PMID: 26862700      PMCID: PMC4781710          DOI: 10.3791/53518

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  20 in total

1.  Expression cloning of noggin, a new dorsalizing factor localized to the Spemann organizer in Xenopus embryos.

Authors:  W C Smith; R M Harland
Journal:  Cell       Date:  1992-09-04       Impact factor: 41.582

2.  Injected Xwnt-8 RNA acts early in Xenopus embryos to promote formation of a vegetal dorsalizing center.

Authors:  W C Smith; R M Harland
Journal:  Cell       Date:  1991-11-15       Impact factor: 41.582

3.  Expression cloning of Siamois, a Xenopus homeobox gene expressed in dorsal-vegetal cells of blastulae and able to induce a complete secondary axis.

Authors:  P Lemaire; N Garrett; J B Gurdon
Journal:  Cell       Date:  1995-04-07       Impact factor: 41.582

4.  RNA-seq in the tetraploid Xenopus laevis enables genome-wide insight in a classic developmental biology model organism.

Authors:  Nirav M Amin; Panna Tandon; Erin Osborne Nishimura; Frank L Conlon
Journal:  Methods       Date:  2013-06-20       Impact factor: 3.608

5.  Defining a large set of full-length clones from a Xenopus tropicalis EST project.

Authors:  Michael J Gilchrist; Aaron M Zorn; Jana Voigt; James C Smith; Nancy Papalopulu; Enrique Amaya
Journal:  Dev Biol       Date:  2004-07-15       Impact factor: 3.582

6.  Forward genetic screens in Xenopus using transposon-mediated insertional mutagenesis.

Authors:  Donald A Yergeau; Clair M Kelley; Haiqing Zhu; Emin Kuliyev; Paul E Mead
Journal:  Methods Mol Biol       Date:  2012

7.  Reverse genetic studies using antisense morpholino oligonucleotides.

Authors:  Yanan Zhao; Shoko Ishibashi; Enrique Amaya
Journal:  Methods Mol Biol       Date:  2012

8.  Changes in neural and lens competence in Xenopus ectoderm: evidence for an autonomous developmental timer.

Authors:  M Servetnick; R M Grainger
Journal:  Development       Date:  1991-05       Impact factor: 6.868

9.  Expression cloning of a Xenopus T-related gene (Xombi) involved in mesodermal patterning and blastopore lip formation.

Authors:  K D Lustig; K L Kroll; E E Sun; M W Kirschner
Journal:  Development       Date:  1996-12       Impact factor: 6.868

10.  A functional genome-wide in vivo screen identifies new regulators of signalling pathways during early Xenopus embryogenesis.

Authors:  Siwei Zhang; Jingjing Li; Robert Lea; Enrique Amaya; Karel Dorey
Journal:  PLoS One       Date:  2013-11-14       Impact factor: 3.240

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