Literature DB >> 31254427

Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis.

Anneke Kakebeen1, Andrea Wills1.   

Abstract

Xenopus laevis and Xenopus tropicalis have long been used to drive discovery in developmental, cell, and molecular biology. These dual frog species boast experimental strengths for embryology including large egg sizes that develop externally, well-defined fate maps, and cell-intrinsic sources of nutrients that allow explanted tissues to grow in culture. Development of the Xenopus cell extract system has been used to study cell cycle and DNA replication. Xenopus tadpole tail and limb regeneration have provided fundamental insights into the underlying mechanisms of this processes, and the loss of regenerative competency in adults adds a complexity to the system that can be more directly compared to humans. Moreover, Xenopus genetics and especially disease-causing mutations are highly conserved with humans, making them a tractable system to model human disease. In the last several years, genome editing, expanding genomic resources, and intersectional approaches leveraging the distinct characteristics of each species have generated new frontiers in cell biology. While Xenopus have enduringly represented a leading embryological model, new technologies are generating exciting diversity in the range of discoveries being made in areas from genomics and proteomics to regenerative biology, neurobiology, cell scaling, and human disease modeling.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  zzm321990Xenopus tropicalis; cell scaling; genome editing; genomics

Mesh:

Year:  2019        PMID: 31254427      PMCID: PMC6948711          DOI: 10.1002/dvdy.80

Source DB:  PubMed          Journal:  Dev Dyn        ISSN: 1058-8388            Impact factor:   3.780


  51 in total

Review 1.  Targeted integration of genes in Xenopus tropicalis.

Authors:  Zhaoying Shi; Dandan Tian; Huhu Xin; Jingru Lian; Xiaogang Guo; Yonglong Chen
Journal:  Genesis       Date:  2017-01       Impact factor: 2.487

2.  Techniques and probes for the study of Xenopus tropicalis development.

Authors:  Mustafa K Khokha; Christina Chung; Erika L Bustamante; Lisa W K Gaw; Kristin A Trott; Joanna Yeh; Nancy Lim; Jennifer C Y Lin; Nicola Taverner; Enrique Amaya; Nancy Papalopulu; James C Smith; Aaron M Zorn; Richard M Harland; Timothy C Grammer
Journal:  Dev Dyn       Date:  2002-12       Impact factor: 3.780

3.  Nuclear size is regulated by importin α and Ntf2 in Xenopus.

Authors:  Daniel L Levy; Rebecca Heald
Journal:  Cell       Date:  2010-10-15       Impact factor: 41.582

4.  A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos.

Authors:  Robert C Akkers; Simon J van Heeringen; Ulrike G Jacobi; Eva M Janssen-Megens; Kees-Jan Françoijs; Hendrik G Stunnenberg; Gert Jan C Veenstra
Journal:  Dev Cell       Date:  2009-09       Impact factor: 12.270

5.  The Nuclear Proteome of a Vertebrate.

Authors:  Martin Wühr; Thomas Güttler; Leonid Peshkin; Graeme C McAlister; Matthew Sonnett; Keisuke Ishihara; Aaron C Groen; Marc Presler; Brian K Erickson; Timothy J Mitchison; Marc W Kirschner; Steven P Gygi
Journal:  Curr Biol       Date:  2015-10-01       Impact factor: 10.834

6.  Xenopus tropicalis egg extracts provide insight into scaling of the mitotic spindle.

Authors:  Katherine S Brown; Michael D Blower; Thomas J Maresca; Timothy C Grammer; Richard M Harland; Rebecca Heald
Journal:  J Cell Biol       Date:  2007-03-05       Impact factor: 10.539

Review 7.  Xenbase: Facilitating the Use of Xenopus to Model Human Disease.

Authors:  Mardi J Nenni; Malcolm E Fisher; Christina James-Zorn; Troy J Pells; Virgilio Ponferrada; Stanley Chu; Joshua D Fortriede; Kevin A Burns; Ying Wang; Vaneet S Lotay; Dong Zhou Wang; Erik Segerdell; Praneet Chaturvedi; Kamran Karimi; Peter D Vize; Aaron M Zorn
Journal:  Front Physiol       Date:  2019-02-26       Impact factor: 4.566

8.  CRISPR/Cas9: An inexpensive, efficient loss of function tool to screen human disease genes in Xenopus.

Authors:  Dipankan Bhattacharya; Chris A Marfo; Davis Li; Maura Lane; Mustafa K Khokha
Journal:  Dev Biol       Date:  2015-11-04       Impact factor: 3.582

9.  RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.

Authors:  Meng How Tan; Kin Fai Au; Arielle L Yablonovitch; Andrea E Wills; Jason Chuang; Julie C Baker; Wing Hung Wong; Jin Billy Li
Journal:  Genome Res       Date:  2012-09-07       Impact factor: 9.043

10.  Efficient genome editing of genes involved in neural crest development using the CRISPR/Cas9 system in Xenopus embryos.

Authors:  Zhongzhen Liu; Tina Tsz Kwan Cheng; Zhaoying Shi; Ziran Liu; Yong Lei; Chengdong Wang; Weili Shi; Xiongfeng Chen; Xufeng Qi; Dongqing Cai; Bo Feng; Yi Deng; Yonglong Chen; Hui Zhao
Journal:  Cell Biosci       Date:  2016-03-31       Impact factor: 7.133

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  8 in total

Review 1.  Organelle size scaling over embryonic development.

Authors:  Chase C Wesley; Sampada Mishra; Daniel L Levy
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-01-31       Impact factor: 5.814

2.  Embryo, larval, and juvenile staging of Lytechinus pictus from fertilization through sexual maturation.

Authors:  Katherine T Nesbit; Amro Hamdoun
Journal:  Dev Dyn       Date:  2020-08-31       Impact factor: 3.780

3.  Generation of a new six1-null line in Xenopus tropicalis for study of development and congenital disease.

Authors:  Kelsey Coppenrath; Andre L P Tavares; Nikko-Ideen Shaidani; Marcin Wlizla; Sally A Moody; Marko Horb
Journal:  Genesis       Date:  2021-10-19       Impact factor: 2.487

Review 4.  Regulation of organelle size and organization during development.

Authors:  Pan Chen; Daniel L Levy
Journal:  Semin Cell Dev Biol       Date:  2022-02-08       Impact factor: 7.499

5.  Degenerative Osteoarthropathy in Laboratory Housed Xenopus (Silurana) tropicalis.

Authors:  Mingyun Zhang; Sabrina S Wilson; Kerriann M Casey; Paisley E Thomson; Anne L Zlatow; Valerie S Langlois; Sherril L Green
Journal:  Comp Med       Date:  2021-11-18       Impact factor: 1.565

6.  Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience.

Authors:  Helen Rankin Willsey; Cameron R T Exner; Yuxiao Xu; Amanda Everitt; Nawei Sun; Belinda Wang; Jeanselle Dea; Galina Schmunk; Yefim Zaltsman; Nia Teerikorpi; Albert Kim; Aoife S Anderson; David Shin; Meghan Seyler; Tomasz J Nowakowski; Richard M Harland; A Jeremy Willsey; Matthew W State
Journal:  Neuron       Date:  2021-01-25       Impact factor: 18.688

7.  Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS.

Authors:  Anneke Dixie Kakebeen; Alexander Daniel Chitsazan; Andrea Elizabeth Wills
Journal:  Dev Dyn       Date:  2020-11-12       Impact factor: 2.842

Review 8.  Xenopus leads the way: Frogs as a pioneering model to understand the human brain.

Authors:  Cameron R T Exner; Helen Rankin Willsey
Journal:  Genesis       Date:  2020-12-27       Impact factor: 2.487

  8 in total

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