Literature DB >> 12454926

Techniques and probes for the study of Xenopus tropicalis development.

Mustafa K Khokha1, Christina Chung, Erika L Bustamante, Lisa W K Gaw, Kristin A Trott, Joanna Yeh, Nancy Lim, Jennifer C Y Lin, Nicola Taverner, Enrique Amaya, Nancy Papalopulu, James C Smith, Aaron M Zorn, Richard M Harland, Timothy C Grammer.   

Abstract

The frog Xenopus laevis has provided significant insights into developmental and cellular processes. However, X. laevis has an allotetraploid genome precluding its use in forward genetic analysis. Genetic analysis may be applicable to Xenopus (Silurana) tropicalis, which has a diploid genome and a shorter generation time. Here, we show that many tools for the study of X. laevis development can be applied to X. tropicalis. By using the developmental staging system of Nieuwkoop and Faber, we find that X. tropicalis embryos develop at similar rates to X. laevis, although they tolerate a narrower range of temperatures. We also show that many of the analytical reagents available for X. laevis can be effectively transferred to X. tropicalis. The X. laevis protocol for whole-mount in situ hybridization to mRNA transcripts can be successfully applied to X. tropicalis without alteration. Additionally, X. laevis probes often work in X. tropicalis--alleviating the immediate need to clone the X. tropicalis orthologs before initiating developmental studies. Antibodies that react against X. laevis proteins can effectively detect the X. tropicalis protein by using established immunohistochemistry procedures. Antisense morpholino oligonucleotides (MOs) offer a new alternative to study loss of gene activity during development. We show that MOs function in X. tropicalis. Finally, X. tropicalis offers the possibility for forward genetics and genomic analysis. Copyright 2002 Wiley-Liss, Inc.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12454926     DOI: 10.1002/dvdy.10184

Source DB:  PubMed          Journal:  Dev Dyn        ISSN: 1058-8388            Impact factor:   3.780


  106 in total

1.  Three-dimensional, three-vector-component velocimetry of cilia-driven fluid flow using correlation-based approaches in optical coherence tomography.

Authors:  Brendan K Huang; Ute A Gamm; Vineet Bhandari; Mustafa K Khokha; Michael A Choma
Journal:  Biomed Opt Express       Date:  2015-08-24       Impact factor: 3.732

2.  Nkx6 genes pattern the frog neural plate and Nkx6.1 is necessary for motoneuron axon projection.

Authors:  Darwin S Dichmann; Richard M Harland
Journal:  Dev Biol       Date:  2010-10-28       Impact factor: 3.582

3.  Designing feedback-based contrast enhancement for in vivo imaging.

Authors:  Susie Y Huang; Jon K Furuyama; Yung-Ya Lin
Journal:  MAGMA       Date:  2006-12-15       Impact factor: 2.310

4.  E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation.

Authors:  Andrea E Wills; Julie C Baker
Journal:  Dev Cell       Date:  2015-02-09       Impact factor: 12.270

5.  Rare copy number variations in congenital heart disease patients identify unique genes in left-right patterning.

Authors:  Khalid A Fakhro; Murim Choi; Stephanie M Ware; John W Belmont; Jeffrey A Towbin; Richard P Lifton; Mustafa K Khokha; Martina Brueckner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

6.  Physics and the canalization of morphogenesis: a grand challenge in organismal biology.

Authors:  Michelangelo von Dassow; Lance A Davidson
Journal:  Phys Biol       Date:  2011-07-12       Impact factor: 2.583

7.  Centriole biogenesis and function in multiciliated cells.

Authors:  Siwei Zhang; Brian J Mitchell
Journal:  Methods Cell Biol       Date:  2015-05-27       Impact factor: 1.441

8.  Time-lapse X-ray phase-contrast microtomography for in vivo imaging and analysis of morphogenesis.

Authors:  Julian Moosmann; Alexey Ershov; Venera Weinhardt; Tilo Baumbach; Maneeshi S Prasad; Carole LaBonne; Xianghui Xiao; Jubin Kashef; Ralf Hofmann
Journal:  Nat Protoc       Date:  2014-01-09       Impact factor: 13.491

9.  Rapid gynogenetic mapping of Xenopus tropicalis mutations to chromosomes.

Authors:  Mustafa K Khokha; Vladimir Krylov; Michael J Reilly; Joseph G Gall; Dipankan Bhattacharya; Chung Yan J Cheung; Sarah Kaufman; Dang Khoa Lam; Jaroslav Macha; Catherine Ngo; Neha Prakash; Philip Schmidt; Tereza Tlapakova; Toral Trivedi; Lucie Tumova; Anita Abu-Daya; Timothy Geach; Elisenda Vendrell; Holly Ironfield; Ludivine Sinzelle; Amy K Sater; Dan E Wells; Richard M Harland; Lyle B Zimmerman
Journal:  Dev Dyn       Date:  2009-06       Impact factor: 3.780

10.  Xenbase: Core features, data acquisition, and data processing.

Authors:  Christina James-Zorn; Virgillio G Ponferrada; Kevin A Burns; Joshua D Fortriede; Vaneet S Lotay; Yu Liu; J Brad Karpinka; Kamran Karimi; Aaron M Zorn; Peter D Vize
Journal:  Genesis       Date:  2015-07-16       Impact factor: 2.487

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.