Literature DB >> 22855226

Extraction of airways from CT (EXACT'09).

Pechin Lo, Bram van Ginneken, Joseph M Reinhardt, Tarunashree Yavarna, Pim A de Jong, Benjamin Irving, Catalin Fetita, Margarete Ortner, Rômulo Pinho, Jan Sijbers, Marco Feuerstein, Anna Fabijańska, Christian Bauer, Reinhard Beichel, Carlos S Mendoza, Rafael Wiemker, Jaesung Lee, Anthony P Reeves, Silvia Born, Oliver Weinheimer, Eva M van Rikxoort, Juerg Tschirren, Ken Mori, Benjamin Odry, David P Naidich, Ieneke Hartmann, Eric A Hoffman, Mathias Prokop, Jesper H Pedersen, Marleen de Bruijne.   

Abstract

This paper describes a framework for establishing a reference airway tree segmentation, which was used to quantitatively evaluate fifteen different airway tree extraction algorithms in a standardized manner. Because of the sheer difficulty involved in manually constructing a complete reference standard from scratch, we propose to construct the reference using results from all algorithms that are to be evaluated. We start by subdividing each segmented airway tree into its individual branch segments. Each branch segment is then visually scored by trained observers to determine whether or not it is a correctly segmented part of the airway tree. Finally, the reference airway trees are constructed by taking the union of all correctly extracted branch segments. Fifteen airway tree extraction algorithms from different research groups are evaluated on a diverse set of twenty chest computed tomography (CT) scans of subjects ranging from healthy volunteers to patients with severe pathologies, scanned at different sites, with different CT scanner brands, models, and scanning protocols. Three performance measures covering different aspects of segmentation quality were computed for all participating algorithms. Results from the evaluation showed that no single algorithm could extract more than an average of 74% of the total length of all branches in the reference standard, indicating substantial differences between the algorithms. A fusion scheme that obtained superior results is presented, demonstrating that there is complementary information provided by the different algorithms and there is still room for further improvements in airway segmentation algorithms.

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Year:  2012        PMID: 22855226     DOI: 10.1109/TMI.2012.2209674

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  36 in total

1.  LUNGx Challenge for computerized lung nodule classification: reflections and lessons learned.

Authors:  Samuel G Armato; Lubomir Hadjiiski; Georgia D Tourassi; Karen Drukker; Maryellen L Giger; Feng Li; George Redmond; Keyvan Farahani; Justin S Kirby; Laurence P Clarke
Journal:  J Med Imaging (Bellingham)       Date:  2015-04

2.  A "loop" shape descriptor and its application to automated segmentation of airways from CT scans.

Authors:  Jiantao Pu; Chenwang Jin; Nan Yu; Yongqiang Qian; Xiaohua Wang; Xin Meng; Youmin Guo
Journal:  Med Phys       Date:  2015-06       Impact factor: 4.071

3.  Graph-Based Airway Tree Reconstruction From Chest CT Scans: Evaluation of Different Features on Five Cohorts.

Authors:  Christian Bauer; Michael Eberlein; Reinhard R Beichel
Journal:  IEEE Trans Med Imaging       Date:  2014-11-25       Impact factor: 10.048

4.  LUNGx Challenge for computerized lung nodule classification.

Authors:  Samuel G Armato; Karen Drukker; Feng Li; Lubomir Hadjiiski; Georgia D Tourassi; Roger M Engelmann; Maryellen L Giger; George Redmond; Keyvan Farahani; Justin S Kirby; Laurence P Clarke
Journal:  J Med Imaging (Bellingham)       Date:  2016-12-19

5.  Automatic segmentation of airway tree based on local intensity filter and machine learning technique in 3D chest CT volume.

Authors:  Qier Meng; Takayuki Kitasaka; Yukitaka Nimura; Masahiro Oda; Junji Ueno; Kensaku Mori
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-10-28       Impact factor: 2.924

6.  Hybrid Airway Segmentation Using Multi-Scale Tubular Structure Filters and Texture Analysis on 3D Chest CT Scans.

Authors:  Minho Lee; June-Goo Lee; Namkug Kim; Joon Beom Seo; Sang Min Lee
Journal:  J Digit Imaging       Date:  2019-10       Impact factor: 4.056

7.  Segmentation of distal airways using structural analysis.

Authors:  Debora Gil; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell
Journal:  PLoS One       Date:  2019-12-19       Impact factor: 3.240

8.  Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study.

Authors:  Rina D Rudyanto; Sjoerd Kerkstra; Eva M van Rikxoort; Catalin Fetita; Pierre-Yves Brillet; Christophe Lefevre; Wenzhe Xue; Xiangjun Zhu; Jianming Liang; Ilkay Öksüz; Devrim Ünay; Kamuran Kadipaşaoğlu; Raúl San José Estépar; James C Ross; George R Washko; Juan-Carlos Prieto; Marcela Hernández Hoyos; Maciej Orkisz; Hans Meine; Markus Hüllebrand; Christina Stöcker; Fernando Lopez Mir; Valery Naranjo; Eliseo Villanueva; Marius Staring; Changyan Xiao; Berend C Stoel; Anna Fabijanska; Erik Smistad; Anne C Elster; Frank Lindseth; Amir Hossein Foruzan; Ryan Kiros; Karteek Popuri; Dana Cobzas; Daniel Jimenez-Carretero; Andres Santos; Maria J Ledesma-Carbayo; Michael Helmberger; Martin Urschler; Michael Pienn; Dennis G H Bosboom; Arantza Campo; Mathias Prokop; Pim A de Jong; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Bram van Ginneken
Journal:  Med Image Anal       Date:  2014-07-23       Impact factor: 8.545

9.  Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation.

Authors:  Jens Petersen; Mathilde M W Wille; Lars Lau Rakêt; Aasa Feragen; Jesper H Pedersen; Mads Nielsen; Asger Dirksen; Marleen de Bruijne
Journal:  Eur Radiol       Date:  2014-06-06       Impact factor: 5.315

10.  A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images.

Authors:  Avan Suinesiaputra; Brett R Cowan; Ahmed O Al-Agamy; Mustafa A Elattar; Nicholas Ayache; Ahmed S Fahmy; Ayman M Khalifa; Pau Medrano-Gracia; Marie-Pierre Jolly; Alan H Kadish; Daniel C Lee; Ján Margeta; Simon K Warfield; Alistair A Young
Journal:  Med Image Anal       Date:  2013-09-13       Impact factor: 8.545

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