Literature DB >> 26127059

A "loop" shape descriptor and its application to automated segmentation of airways from CT scans.

Jiantao Pu1, Chenwang Jin2, Nan Yu2, Yongqiang Qian2, Xiaohua Wang3, Xin Meng4, Youmin Guo2.   

Abstract

PURPOSE: A novel shape descriptor is presented to aid an automated identification of the airways depicted on computed tomography (CT) images.
METHODS: Instead of simplifying the tubular characteristic of the airways as an ideal mathematical cylindrical or circular shape, the proposed "loop" shape descriptor exploits the fact that the cross sections of any tubular structure (regardless of its regularity) always appear as a loop. In implementation, the authors first reconstruct the anatomical structures in volumetric CT as a three-dimensional surface model using the classical marching cubes algorithm. Then, the loop descriptor is applied to locate the airways with a concave loop cross section. To deal with the variation of the airway walls in density as depicted on CT images, a multiple threshold strategy is proposed. A publicly available chest CT database consisting of 20 CT scans, which was designed specifically for evaluating an airway segmentation algorithm, was used for quantitative performance assessment. Measures, including length, branch count, and generations, were computed under the aid of a skeletonization operation.
RESULTS: For the test dataset, the airway length ranged from 64.6 to 429.8 cm, the generation ranged from 7 to 11, and the branch number ranged from 48 to 312. These results were comparable to the performance of the state-of-the-art algorithms validated on the same dataset.
CONCLUSIONS: The authors' quantitative experiment demonstrated the feasibility and reliability of the developed shape descriptor in identifying lung airways.

Mesh:

Year:  2015        PMID: 26127059      PMCID: PMC4449355          DOI: 10.1118/1.4921139

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  28 in total

1.  Three-dimensional human airway segmentation methods for clinical virtual bronchoscopy.

Authors:  Atilla P Kiraly; William E Higgins; Geoffrey McLennan; Eric A Hoffman; Joseph M Reinhardt
Journal:  Acad Radiol       Date:  2002-10       Impact factor: 3.173

2.  Segmentation and analysis of the human airway tree from three-dimensional X-ray CT images.

Authors:  Deniz Aykac; Eric A Hoffman; Geoffrey McLennan; Joseph M Reinhardt
Journal:  IEEE Trans Med Imaging       Date:  2003-08       Impact factor: 10.048

3.  Airway tree extraction with locally optimal paths.

Authors:  Pechin Lo; Jon Sporring; Jesper Johannes Holst Pedersen; Marleen de Bruijne
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

4.  The inter- and intra-operator variability in manual spot segmentation and its effect on spot quantitation in two-dimensional electrophoresis analysis.

Authors:  Renato Millioni; Stefano Sbrignadello; Andrea Tura; Elisabetta Iori; Ellen Murphy; Paolo Tessari
Journal:  Electrophoresis       Date:  2010-05       Impact factor: 3.535

5.  Robust 3-D airway tree segmentation for image-guided peripheral bronchoscopy.

Authors:  Michael W Graham; Jason D Gibbs; Duane C Cornish; William E Higgins
Journal:  IEEE Trans Med Imaging       Date:  2010-03-22       Impact factor: 10.048

6.  Robust segmentation and anatomical labeling of the airway tree from thoracic CT scans.

Authors:  Bram van Ginneken; Wouter Baggerman; Eva M van Rikxoort
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

7.  Selective enhancement filters for nodules, vessels, and airway walls in two- and three-dimensional CT scans.

Authors:  Qiang Li; Shusuke Sone; Kunio Doi
Journal:  Med Phys       Date:  2003-08       Impact factor: 4.071

Review 8.  CT based computerized identification and analysis of human airways: a review.

Authors:  Jiantao Pu; Suicheng Gu; Shusen Liu; Shaocheng Zhu; David Wilson; Jill M Siegfried; David Gur
Journal:  Med Phys       Date:  2012-05       Impact factor: 4.071

9.  Computer-aided diagnosis: the emerging of three CAD systems induced by Japanese health care needs.

Authors:  Hiroshi Fujita; Yoshikazu Uchiyama; Toshiaki Nakagawa; Daisuke Fukuoka; Yuji Hatanaka; Takeshi Hara; Gobert N Lee; Yoshinori Hayashi; Yuji Ikedo; Xin Gao; Xiangrong Zhou
Journal:  Comput Methods Programs Biomed       Date:  2008-06-02       Impact factor: 5.428

10.  CT metrics of airway disease and emphysema in severe COPD.

Authors:  Woo Jin Kim; Edwin K Silverman; Eric Hoffman; Gerard J Criner; Zab Mosenifar; Frank C Sciurba; Barry J Make; Vincent Carey; Raúl San José Estépar; Alejandro Diaz; John J Reilly; Fernando J Martinez; George R Washko
Journal:  Chest       Date:  2009-05-01       Impact factor: 9.410

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