Literature DB >> 22853917

Functional importance of short-range binding and long-range solvent interactions in helical antifreeze peptides.

Simon Ebbinghaus1, Konrad Meister, Maxim B Prigozhin, Arthur L Devries, Martina Havenith, Joachim Dzubiella, Martin Gruebele.   

Abstract

Short-range ice binding and long-range solvent perturbation both have been implicated in the activity of antifreeze proteins and antifreeze glycoproteins. We study these two mechanisms for activity of winter flounder antifreeze peptide. Four mutants are characterized by freezing point hysteresis (activity), circular dichroism (secondary structure), Förster resonance energy transfer (end-to-end rigidity), molecular dynamics simulation (structure), and terahertz spectroscopy (long-range solvent perturbation). Our results show that the short-range model is sufficient to explain the activity of our mutants, but the long-range model provides a necessary condition for activity: the most active peptides in our data set all have an extended dynamical hydration shell. It appears that antifreeze proteins and antifreeze glycoproteins have reached different evolutionary solutions to the antifreeze problem, utilizing either a few precisely positioned OH groups or a large quantity of OH groups for ice binding, assisted by long-range solvent perturbation.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22853917      PMCID: PMC3400764          DOI: 10.1016/j.bpj.2012.06.013

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  10 in total

1.  Dynamics of antifreeze glycoproteins in the presence of ice.

Authors:  Nelly M Tsvetkova; Brian L Phillips; Viswanathan V Krishnan; Robert E Feeney; William H Fink; John H Crowe; Subhash H Risbud; Fern Tablin; Yin Yeh
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

Review 2.  Structures and ice-binding faces of the alanine-rich type I antifreeze proteins.

Authors:  Shruti N Patel; Steffen P Graether
Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

3.  Antifreeze glycoprotein activity correlates with long-range protein-water dynamics.

Authors:  Simon Ebbinghaus; Konrad Meister; Benjamin Born; Arthur L DeVries; Martin Gruebele; Martina Havenith
Journal:  J Am Chem Soc       Date:  2010-09-08       Impact factor: 15.419

4.  An extended dynamical hydration shell around proteins.

Authors:  Simon Ebbinghaus; Seung Joong Kim; Matthias Heyden; Xin Yu; Udo Heugen; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

5.  A diminished role for hydrogen bonds in antifreeze protein binding to ice.

Authors:  H Chao; M E Houston; R S Hodges; C M Kay; B D Sykes; M C Loewen; P L Davies; F D Sönnichsen
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

6.  Adsorption inhibition as a mechanism of freezing resistance in polar fishes.

Authors:  J A Raymond; A L DeVries
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

7.  Structure of a peptide antifreeze and mechanism of adsorption to ice.

Authors:  A L Devries; Y Lin
Journal:  Biochim Biophys Acta       Date:  1977-12-20

8.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

Review 9.  Type I 'antifreeze' proteins. Structure-activity studies and mechanisms of ice growth inhibition.

Authors:  M M Harding; L G Ward; A D Haymet
Journal:  Eur J Biochem       Date:  1999-09

10.  Enhancement of insect antifreeze protein activity by solutes of low molecular mass.

Authors:  N Li; C A Andorfer; J G Duman
Journal:  J Exp Biol       Date:  1998-08       Impact factor: 3.312

  10 in total
  4 in total

1.  Long-range protein-water dynamics in hyperactive insect antifreeze proteins.

Authors:  Konrad Meister; Simon Ebbinghaus; Yao Xu; John G Duman; Arthur DeVries; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

2.  Water is an active matrix of life for cell and molecular biology.

Authors:  Philip Ball
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-07       Impact factor: 11.205

3.  On the existence of soliton-like collective modes in liquid water at the viscoelastic crossover.

Authors:  V E Zakhvataev; L A Kompaniets
Journal:  Sci Rep       Date:  2021-03-08       Impact factor: 4.379

4.  Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction.

Authors:  Ellen M Adams; Simone Pezzotti; Jonas Ahlers; Maximilian Rüttermann; Maxim Levin; Adi Goldenzweig; Yoav Peleg; Sarel J Fleishman; Irit Sagi; Martina Havenith
Journal:  JACS Au       Date:  2021-06-18
  4 in total

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