Literature DB >> 10491111

Type I 'antifreeze' proteins. Structure-activity studies and mechanisms of ice growth inhibition.

M M Harding1, L G Ward, A D Haymet.   

Abstract

The type I 'antifreeze' proteins, found in the body fluids of fish inhabiting polar oceans, are alanine-rich alpha-helical proteins that are able to inhibit the growth of ice. Within this class there are two distinct subclasses of proteins: those related to the winter flounder sequence HPLC6 and which contain 11-residue repeat units commencing with threonine; and those from the sculpins that are unique in the N-terminal region that contains established helix breakers and lacks the 11-residue repeat structure present in the rest of the protein. Although 14 type I proteins have been isolated, almost all research has focused on HPLC6, the 37-residue protein from the winter flounder Pseudopleuronectes americanus. This protein modifies both the rate and shape (or 'habit') of ice crystal growth, displays hysteresis and accumulates specifically at the {2 0 2; 1} ice plane. Until very recently, all models to explain the mechanism for this specific interaction have relied on the interaction of the four threonine hydroxyls, which are spaced equally apart on one face of the helix, with the ice lattice. In contrast, proteins belonging to the sculpin family accumulate specifically at the {2 1; 1; 0} plane. The molecular origin of this difference in specificity between the flounder and sculpin proteins is not understood. This review will summarize the structure-activity and molecular modelling and dynamics studies on HPLC6, with an emphasis on recent studies in which the threonine residues have been mutated. These studies have identified important hydrophobic contributions to the ice growth inhibition mechanism. Some 50 mutants of HPLC6 have been reported and the data is consistent with the following requirements for ice growth inhibition: (a) a minimum length of approx. 25 residues; (b) an alanine-rich sequence in order to induce a highly helical conformation; (c) a hydrophobic face; (d) a number of charged/polar residues which are involved in solubility and/or interaction with the ice surface. The emerging picture, that requires further dynamics studies including accurate modelling of the ice/water interface, suggests that a hydrophobic interaction between the surface of the protein and ice is the key to explaining accumulation at specific ice planes, and thus the molecular level mechanism for ice growth inhibition.

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Year:  1999        PMID: 10491111     DOI: 10.1046/j.1432-1327.1999.00617.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  30 in total

1.  Comparison of the solution conformation and dynamics of antifreeze glycoproteins from Antarctic fish.

Authors:  A N Lane; L M Hays; N Tsvetkova; R E Feeney; L M Crowe; J H Crowe
Journal:  Biophys J       Date:  2000-06       Impact factor: 4.033

2.  Dynamics of antifreeze glycoproteins in the presence of ice.

Authors:  Nelly M Tsvetkova; Brian L Phillips; Viswanathan V Krishnan; Robert E Feeney; William H Fink; John H Crowe; Subhash H Risbud; Fern Tablin; Yin Yeh
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

3.  Theoretical study of interaction of winter flounder antifreeze protein with ice.

Authors:  Alexander Jorov; Boris S Zhorov; Daniel S C Yang
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

4.  Increased flexibility decreases antifreeze protein activity.

Authors:  Shruti N Patel; Steffen P Graether
Journal:  Protein Sci       Date:  2010-11-11       Impact factor: 6.725

5.  Conformational behavior of chemically reactive alanine-rich repetitive protein polymers.

Authors:  Robin S Farmer; Kristi L Kiick
Journal:  Biomacromolecules       Date:  2005 May-Jun       Impact factor: 6.988

6.  Type I antifreeze proteins: possible origins from chorion and keratin genes in Atlantic snailfish.

Authors:  Robert P Evans; Garth L Fletcher
Journal:  J Mol Evol       Date:  2005-08-25       Impact factor: 2.395

7.  Activity of a two-domain antifreeze protein is not dependent on linker sequence.

Authors:  Nolan B Holland; Yoshiyuki Nishimiya; Sakae Tsuda; Frank D Sönnichsen
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

8.  Fluorescence microscopy evidence for quasi-permanent attachment of antifreeze proteins to ice surfaces.

Authors:  Natalya Pertaya; Christopher B Marshall; Carlos L DiPrinzio; Larry Wilen; Erik S Thomson; J S Wettlaufer; Peter L Davies; Ido Braslavsky
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

9.  A solid-state NMR study of the interaction of fish antifreeze proteins with phospholipid membranes.

Authors:  James Garner; Steven R Inglis; James Hook; Frances Separovic; Margaret M Harding
Journal:  Eur Biophys J       Date:  2008-05-01       Impact factor: 1.733

10.  Conformational Properties of Helical Protein Polymers with Varying Densities of Chemically Reactive Groups.

Authors:  Robin S Farmer; Lindsey M Argust; Jared D Sharp; Kristi L Kiick
Journal:  Macromolecules       Date:  2006       Impact factor: 5.985

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