Literature DB >> 9398184

A diminished role for hydrogen bonds in antifreeze protein binding to ice.

H Chao1, M E Houston, R S Hodges, C M Kay, B D Sykes, M C Loewen, P L Davies, F D Sönnichsen.   

Abstract

The most abundant isoform (HPLC-6) of type I antifreeze protein (AFP1) in winter flounder is a 37-amino-acid-long, alanine-rich, alpha-helical peptide, containing four Thr spaced 11 amino acids apart. It is generally assumed that HPLC-6 binds ice through a hydrogen-bonding match between the Thr and neighboring Asx residues to oxygens atoms on the {2021} plane of the ice lattice. The result is a lowering of the nonequilibrium freezing point below the melting point (thermal hysteresis). HPLC-6, and two variants in which the central two Thr were replaced with either Ser or Val, were synthesized. The Ser variant was virtually inactive, while only a minor loss of activity was observed in the Val variant. CD, ultracentrifugation, and NMR studies indicated no significant structural changes or aggregation of the variants compared to HPLC-6. These results call into question the role of hydrogen bonds and suggest a much more significant role for entropic effects and van der Waals interactions in binding AFP to ice.

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Year:  1997        PMID: 9398184     DOI: 10.1021/bi970817d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  37 in total

1.  Modeling Pseudomonas syringae ice-nucleation protein as a beta-helical protein.

Authors:  S P Graether; Z Jia
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

2.  A mechanism for stabilization of membranes at low temperatures by an antifreeze protein.

Authors:  Melanie M Tomczak; Dirk K Hincha; Sergio D Estrada; Willem F Wolkers; Lois M Crowe; Robert E Feeney; Fern Tablin; John H Crowe
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Structure of type I antifreeze protein and mutants in supercooled water.

Authors:  S P Graether; C M Slupsky; P L Davies; B D Sykes
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

4.  Analysis of ice-binding sites in fish type II antifreeze protein by quantum mechanics.

Authors:  Yuhua Cheng; Zuoyin Yang; Hongwei Tan; Ruozhuang Liu; Guangju Chen; Zongchao Jia
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

5.  Theoretical study of interaction of winter flounder antifreeze protein with ice.

Authors:  Alexander Jorov; Boris S Zhorov; Daniel S C Yang
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

6.  Increased flexibility decreases antifreeze protein activity.

Authors:  Shruti N Patel; Steffen P Graether
Journal:  Protein Sci       Date:  2010-11-11       Impact factor: 6.725

7.  Antifreeze proteins at the ice/water interface: three calculated discriminating properties for orientation of type I proteins.

Authors:  Andrzej Wierzbicki; Pranav Dalal; Thomas E Cheatham; Jared E Knickelbein; A D J Haymet; Jeffry D Madura
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

8.  Anchored clathrate waters bind antifreeze proteins to ice.

Authors:  Christopher P Garnham; Robert L Campbell; Peter L Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

9.  Antifreeze proteins bind independently to ice.

Authors:  C I DeLuca; R Comley; P L Davies
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

10.  Functional importance of short-range binding and long-range solvent interactions in helical antifreeze peptides.

Authors:  Simon Ebbinghaus; Konrad Meister; Maxim B Prigozhin; Arthur L Devries; Martina Havenith; Joachim Dzubiella; Martin Gruebele
Journal:  Biophys J       Date:  2012-07-17       Impact factor: 4.033

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