Literature DB >> 22734434

Ultrafast protein splicing is common among cyanobacterial split inteins: implications for protein engineering.

Neel H Shah1, Geoffrey P Dann, Miquel Vila-Perelló, Zhihua Liu, Tom W Muir.   

Abstract

We describe the first systematic study of a family of inteins, the split DnaE inteins from cyanobacteria. By measuring in vivo splicing efficiencies and in vitro kinetics, we demonstrate that several inteins can catalyze protein trans-splicing in tens of seconds rather than hours, as is commonly observed for this autoprocessing protein family. Furthermore, we show that when artificially fused, these inteins can be used for rapid generation of protein α-thioesters for expressed protein ligation. This comprehensive survey of split inteins provides indispensable information for the development and improvement of intein-based tools for chemical biology.

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Year:  2012        PMID: 22734434      PMCID: PMC3535263          DOI: 10.1021/ja303226x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Highly efficient and more general cis- and trans-splicing inteins through sequential directed evolution.

Authors:  Julia H Appleby-Tagoe; Ilka V Thiel; Yi Wang; Yanfei Wang; Henning D Mootz; Xiang-Qin Liu
Journal:  J Biol Chem       Date:  2011-08-08       Impact factor: 5.157

2.  Functional characterization of a naturally occurring trans-splicing intein from Synechococcus elongatus in a mammalian cell system.

Authors:  Linjie Chen; Yaping Zhang; Guo Li; Haishan Huang; Naiming Zhou
Journal:  Anal Biochem       Date:  2010-08-18       Impact factor: 3.365

3.  Traceless protein splicing utilizing evolved split inteins.

Authors:  Steve W Lockless; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

4.  Modification of transmembrane and GPI-anchored proteins on living cells by efficient protein trans-splicing using the Npu DnaE intein.

Authors:  Tulika Dhar; Henning D Mootz
Journal:  Chem Commun (Camb)       Date:  2011-01-13       Impact factor: 6.222

5.  Segmental isotopic labeling of a central domain in a multidomain protein by protein trans-splicing using only one robust DnaE intein.

Authors:  Alena E L Busche; A Sesilja Aranko; Mehdi Talebzadeh-Farooji; Frank Bernhard; Volker Dötsch; Hideo Iwaï
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

6.  Kinetic control of one-pot trans-splicing reactions by using a wild-type and designed split intein.

Authors:  Neel H Shah; Miquel Vila-Perelló; Tom W Muir
Journal:  Angew Chem Int Ed Engl       Date:  2011-06-08       Impact factor: 15.336

7.  Backbone dynamics and global effects of an activating mutation in minimized Mtu RecA inteins.

Authors:  Zhenming Du; Yangzhong Liu; David Ban; Maria M Lopez; Marlene Belfort; Chunyu Wang
Journal:  J Mol Biol       Date:  2010-05-24       Impact factor: 5.469

8.  Biological applications of protein splicing.

Authors:  Miquel Vila-Perelló; Tom W Muir
Journal:  Cell       Date:  2010-10-15       Impact factor: 41.582

9.  Solution structure of DnaE intein from Nostoc punctiforme: structural basis for the design of a new split intein suitable for site-specific chemical modification.

Authors:  Jesper S Oeemig; A Sesilja Aranko; Janica Djupsjöbacka; Kimmo Heinämäki; Hideo Iwaï
Journal:  FEBS Lett       Date:  2009-04-01       Impact factor: 4.124

10.  The naturally split Npu DnaE intein exhibits an extraordinarily high rate in the protein trans-splicing reaction.

Authors:  Joachim Zettler; Vivien Schütz; Henning D Mootz
Journal:  FEBS Lett       Date:  2009-02-10       Impact factor: 4.124

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  54 in total

1.  Synthesis of a Bis-thio-acetone (BTA) Analogue of the Lysine Isopeptide Bond and its Application to Investigate the Effects of Ubiquitination and SUMOylation on α-Synuclein Aggregation and Toxicity.

Authors:  Yuka E Lewis; Tharindumala Abeywardana; Yu Hsuan Lin; Ana Galesic; Matthew R Pratt
Journal:  ACS Chem Biol       Date:  2016-01-12       Impact factor: 5.100

Review 2.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

3.  A promiscuous split intein with expanded protein engineering applications.

Authors:  Adam J Stevens; Giridhar Sekar; Neel H Shah; Anahita Z Mostafavi; David Cowburn; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

4.  Genomic targeting of epigenetic probes using a chemically tailored Cas9 system.

Authors:  Glen P Liszczak; Zachary Z Brown; Samuel H Kim; Rob C Oslund; Yael David; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-09       Impact factor: 11.205

Review 5.  Recent progress in intein research: from mechanism to directed evolution and applications.

Authors:  Gerrit Volkmann; Henning D Mootz
Journal:  Cell Mol Life Sci       Date:  2012-08-28       Impact factor: 9.261

6.  Inteins: Nature's Gift to Protein Chemists.

Authors:  Neel H Shah; Tom W Muir
Journal:  Chem Sci       Date:  2014       Impact factor: 9.825

Review 7.  Nature's recipe for splitting inteins.

Authors:  A Sesilja Aranko; Alexander Wlodawer; Hideo Iwaï
Journal:  Protein Eng Des Sel       Date:  2014-08       Impact factor: 1.650

Review 8.  Structural and dynamical features of inteins and implications on protein splicing.

Authors:  Ertan Eryilmaz; Neel H Shah; Tom W Muir; David Cowburn
Journal:  J Biol Chem       Date:  2014-04-02       Impact factor: 5.157

9.  Site-specific differences in proteasome-dependent degradation of monoubiquitinated α-synuclein.

Authors:  Tharindumala Abeywardana; Yu Hsuan Lin; Ruth Rott; Simone Engelender; Matthew R Pratt
Journal:  Chem Biol       Date:  2013-10-24

10.  Structure-based engineering and comparison of novel split inteins for protein ligation.

Authors:  A Sesilja Aranko; Jesper S Oeemig; Dongwen Zhou; Tommi Kajander; Alexander Wlodawer; Hideo Iwaï
Journal:  Mol Biosyst       Date:  2014-05
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