Literature DB >> 24695731

Structural and dynamical features of inteins and implications on protein splicing.

Ertan Eryilmaz1, Neel H Shah2, Tom W Muir2, David Cowburn3.   

Abstract

Protein splicing is a posttranslational modification where intervening proteins (inteins) cleave themselves from larger precursor proteins and ligate their flanking polypeptides (exteins) through a multistep chemical reaction. First thought to be an anomaly found in only a few organisms, protein splicing by inteins has since been observed in microorganisms from all domains of life. Despite this broad phylogenetic distribution, all inteins share common structural features such as a horseshoe-like pseudo two-fold symmetric fold, several canonical sequence motifs, and similar splicing mechanisms. Intriguingly, the splicing efficiencies and substrate specificity of different inteins vary considerably, reflecting subtle changes in the chemical mechanism of splicing, linked to their local structure and dynamics. As intein chemistry has widespread use in protein chemistry, understanding the structural and dynamical aspects of inteins is crucial for intein engineering and the improvement of intein-based technologies.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Intein; NMR; Protein Engineering; Protein Folding; Protein Splicing; Protein Structure; Protein-Protein Interactions

Mesh:

Substances:

Year:  2014        PMID: 24695731      PMCID: PMC4031508          DOI: 10.1074/jbc.R113.540302

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  50 in total

1.  A genetic system yields self-cleaving inteins for bioseparations.

Authors:  D W Wood; W Wu; G Belfort; V Derbyshire; M Belfort
Journal:  Nat Biotechnol       Date:  1999-09       Impact factor: 54.908

2.  Autoproteolysis coupled to protein folding in the SEA domain of the membrane-bound MUC1 mucin.

Authors:  Bertil Macao; Denny G A Johansson; Gunnar C Hansson; Torleif Härd
Journal:  Nat Struct Mol Biol       Date:  2005-12-20       Impact factor: 15.369

3.  Highly efficient protein trans-splicing by a naturally split DnaE intein from Nostoc punctiforme.

Authors:  Hideo Iwai; Sara Züger; Jennifer Jin; Pui-Hang Tam
Journal:  FEBS Lett       Date:  2006-02-24       Impact factor: 4.124

Review 4.  Protein splicing of inteins and hedgehog autoproteolysis: structure, function, and evolution.

Authors:  F B Perler
Journal:  Cell       Date:  1998-01-09       Impact factor: 41.582

5.  Crystal structure of GyrA intein from Mycobacterium xenopi reveals structural basis of protein splicing.

Authors:  T Klabunde; S Sharma; A Telenti; W R Jacobs; J C Sacchettini
Journal:  Nat Struct Biol       Date:  1998-01

6.  Crystal structure of a Hedgehog autoprocessing domain: homology between Hedgehog and self-splicing proteins.

Authors:  T M Hall; J A Porter; K E Young; E V Koonin; P A Beachy; D J Leahy
Journal:  Cell       Date:  1997-10-03       Impact factor: 41.582

7.  Compilation and analysis of intein sequences.

Authors:  F B Perler; G J Olsen; E Adam
Journal:  Nucleic Acids Res       Date:  1997-03-15       Impact factor: 16.971

8.  Crystal structures of an intein from the split dnaE gene of Synechocystis sp. PCC6803 reveal the catalytic model without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing.

Authors:  Ping Sun; Sheng Ye; Sebastien Ferrandon; Thomas C Evans; Ming-Qun Xu; Zihe Rao
Journal:  J Mol Biol       Date:  2005-09-30       Impact factor: 5.469

9.  Conserved sequence features of inteins (protein introns) and their use in identifying new inteins and related proteins.

Authors:  S Pietrokovski
Journal:  Protein Sci       Date:  1994-12       Impact factor: 6.725

10.  Protein splicing: characterization of the aminosuccinimide residue at the carboxyl terminus of the excised intervening sequence.

Authors:  Y Shao; M Q Xu; H Paulus
Journal:  Biochemistry       Date:  1995-08-29       Impact factor: 3.162

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  27 in total

1.  Allosteric Influence of Extremophile Hairpin Motif Mutations on the Protein Splicing Activity of a Hyperthermophilic Intein.

Authors:  Kathryn C Chiarolanzio; Jennifer M Pusztay; Angel Chavez; Jing Zhao; Jian Xie; Chunyu Wang; Kenneth V Mills
Journal:  Biochemistry       Date:  2020-06-24       Impact factor: 3.162

Review 2.  Chemoenzymatic Semisynthesis of Proteins.

Authors:  Robert E Thompson; Tom W Muir
Journal:  Chem Rev       Date:  2019-11-27       Impact factor: 60.622

3.  Exploring Intein Inhibition by Platinum Compounds as an Antimicrobial Strategy.

Authors:  Hon Chan; C Seth Pearson; Cathleen M Green; Zhong Li; Jing Zhang; Georges Belfort; Alex Shekhtman; Hongmin Li; Marlene Belfort
Journal:  J Biol Chem       Date:  2016-09-08       Impact factor: 5.157

4.  Protein folding, misfolding and aggregation: The importance of two-electron stabilizing interactions.

Authors:  Andrzej Stanisław Cieplak
Journal:  PLoS One       Date:  2017-09-18       Impact factor: 3.240

5.  Live-cell protein engineering with an ultra-short split intein.

Authors:  Antony J Burton; Michael Haugbro; Eva Parisi; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-18       Impact factor: 11.205

6.  An Atypical Mechanism of Split Intein Molecular Recognition and Folding.

Authors:  Adam J Stevens; Giridhar Sekar; Josef A Gramespacher; David Cowburn; Tom W Muir
Journal:  J Am Chem Soc       Date:  2018-09-10       Impact factor: 15.419

7.  Small-molecule inhibitors for the Prp8 intein as antifungal agents.

Authors:  Zhong Li; Anil Mathew Tharappel; Jimin Xu; Yuekun Lang; Cathleen M Green; Jing Zhang; Qishan Lin; Sudha Chaturvedi; Jia Zhou; Marlene Belfort; Hongmin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

8.  Dynamics differentiate between active and inactive inteins.

Authors:  Melissa Cronin; Michael J Coolbaugh; David Nellis; Jianwei Zhu; David W Wood; Ruth Nussinov; Buyong Ma
Journal:  Eur J Med Chem       Date:  2014-07-27       Impact factor: 6.514

9.  Methods to Study the Structure and Catalytic Activity of cis-Splicing Inteins.

Authors:  Jing Zhao; Zhenming Du; Chunyu Wang; Kenneth V Mills
Journal:  Methods Mol Biol       Date:  2020

Review 10.  An emerging perspective on 'histone code' mediated regulation of neural plasticity and disease.

Authors:  Lorna A Farrelly; Ian Maze
Journal:  Curr Opin Neurobiol       Date:  2019-08-02       Impact factor: 6.627

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