Literature DB >> 20562025

Backbone dynamics and global effects of an activating mutation in minimized Mtu RecA inteins.

Zhenming Du1, Yangzhong Liu, David Ban, Maria M Lopez, Marlene Belfort, Chunyu Wang.   

Abstract

Inteins mediate protein splicing, which has found many applications in biotechnology and protein engineering. A single valine-to-leucine mutation (V67L) can globally enhance splicing and related cleavage reactions in minimized Mycobacterium tuberculosis RecA inteins. However, V67L mutation causes little change in crystal structures. To test whether protein dynamics contribute to activity enhancement in the V67L mutation, we have studied the conformations and dynamics of the minimized and engineered intein DeltaDeltaIhh-V67CM and a single V67L mutant, DeltaDeltaIhh-L67CM, by solution NMR. Chemical shift perturbations established that the V67L mutation causes global changes, including changes at the N-terminus and C-terminus of the intein, which are active sites for protein splicing. The single V67L mutation significantly slows hydrogen-exchange rates globally, indicating a shift to more stable conformations and reduction in ensemble distribution. Whereas the V67L mutation causes little change for motions on the picosecond-to-nanosecond timescale, motions on the microsecond-to-millisecond timescale affect a region involving the conserved F-block histidine and C-terminal asparagine, which are residues important for C-terminal cleavage. The V67L mutation is proposed to activate splicing by reducing the ensemble distribution of the intein structure and by modifying the active sites. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20562025      PMCID: PMC2914542          DOI: 10.1016/j.jmb.2010.05.044

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  39 in total

1.  Crystallographic and mutational studies of Mycobacterium tuberculosis recA mini-inteins suggest a pivotal role for a highly conserved aspartate residue.

Authors:  Patrick Van Roey; Brian Pereira; Zhong Li; Kaori Hiraga; Marlene Belfort; Victoria Derbyshire
Journal:  J Mol Biol       Date:  2006-12-23       Impact factor: 5.469

2.  Mechanism for intein C-terminal cleavage: a proposal from quantum mechanical calculations.

Authors:  Philip Shemella; Brian Pereira; Yiming Zhang; Patrick Van Roey; Georges Belfort; Shekhar Garde; Saroj K Nayak
Journal:  Biophys J       Date:  2006-11-03       Impact factor: 4.033

3.  NMR structure of a KlbA intein precursor from Methanococcus jannaschii.

Authors:  Margaret A Johnson; Maurice W Southworth; Torsten Herrmann; Lear Brace; Francine B Perler; Kurt Wüthrich
Journal:  Protein Sci       Date:  2007-07       Impact factor: 6.725

4.  Quantifying the protein core flexibility through analysis of cavity formation.

Authors:  Brian Pereira; Sandeep Jain; Shekhar Garde
Journal:  J Chem Phys       Date:  2006-02-21       Impact factor: 3.488

Review 5.  Allosteric regulation and catalysis emerge via a common route.

Authors:  Nina M Goodey; Stephen J Benkovic
Journal:  Nat Chem Biol       Date:  2008-08       Impact factor: 15.040

6.  Traceless protein splicing utilizing evolved split inteins.

Authors:  Steve W Lockless; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

7.  Backbone dynamics of TEM-1 determined by NMR: evidence for a highly ordered protein.

Authors:  Pierre-Yves Savard; Stéphane M Gagné
Journal:  Biochemistry       Date:  2006-09-26       Impact factor: 3.162

8.  pH Rate profiles of FnY356-R2s (n = 2, 3, 4) in Escherichia coli ribonucleotide reductase: evidence that Y356 is a redox-active amino acid along the radical propagation pathway.

Authors:  Mohammad R Seyedsayamdost; Cyril S Yee; Steven Y Reece; Daniel G Nocera; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2006-02-08       Impact factor: 15.419

9.  1H, 13C, and 15N NMR assignments of an engineered intein based on Mycobacterium tuberculosis RecA.

Authors:  Zhenming Du; Yangzhong Liu; Yuchuan Zheng; Scott McCallum; John Dansereau; Victoria Derbyshire; Marlene Belfort; Georges Belfort; Patrick Van Roey; Chunyu Wang
Journal:  Biomol NMR Assign       Date:  2008-05-30       Impact factor: 0.746

10.  Solution structure of DnaE intein from Nostoc punctiforme: structural basis for the design of a new split intein suitable for site-specific chemical modification.

Authors:  Jesper S Oeemig; A Sesilja Aranko; Janica Djupsjöbacka; Kimmo Heinämäki; Hideo Iwaï
Journal:  FEBS Lett       Date:  2009-04-01       Impact factor: 4.124

View more
  18 in total

1.  1H, 13C, and 15N NMR assignments of the Pyrococcus abyssi DNA polymerase II intein.

Authors:  Jiajing Liu; Zhenming Du; Clayton D Albracht; Roshni O Naidu; Kenneth V Mills; Chunyu Wang
Journal:  Biomol NMR Assign       Date:  2011-04-26       Impact factor: 0.746

2.  Allosteric Influence of Extremophile Hairpin Motif Mutations on the Protein Splicing Activity of a Hyperthermophilic Intein.

Authors:  Kathryn C Chiarolanzio; Jennifer M Pusztay; Angel Chavez; Jing Zhao; Jian Xie; Chunyu Wang; Kenneth V Mills
Journal:  Biochemistry       Date:  2020-06-24       Impact factor: 3.162

3.  Electronic structure of neighboring extein residue modulates intein C-terminal cleavage activity.

Authors:  Philip T Shemella; Natalya I Topilina; Ikko Soga; Brian Pereira; Georges Belfort; Marlene Belfort; Saroj K Nayak
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

4.  Structural and mutational studies of a hyperthermophilic intein from DNA polymerase II of Pyrococcus abyssi.

Authors:  Zhenming Du; Jiajing Liu; Clayton D Albracht; Alice Hsu; Wen Chen; Michelle D Marieni; Kathryn M Colelli; Jennie E Williams; Julie N Reitter; Kenneth V Mills; Chunyu Wang
Journal:  J Biol Chem       Date:  2011-09-13       Impact factor: 5.157

Review 5.  Recent progress in intein research: from mechanism to directed evolution and applications.

Authors:  Gerrit Volkmann; Henning D Mootz
Journal:  Cell Mol Life Sci       Date:  2012-08-28       Impact factor: 9.261

6.  Ultrafast protein splicing is common among cyanobacterial split inteins: implications for protein engineering.

Authors:  Neel H Shah; Geoffrey P Dann; Miquel Vila-Perelló; Zhihua Liu; Tom W Muir
Journal:  J Am Chem Soc       Date:  2012-07-02       Impact factor: 15.419

Review 7.  Structural and dynamical features of inteins and implications on protein splicing.

Authors:  Ertan Eryilmaz; Neel H Shah; Tom W Muir; David Cowburn
Journal:  J Biol Chem       Date:  2014-04-02       Impact factor: 5.157

8.  Exploring Intein Inhibition by Platinum Compounds as an Antimicrobial Strategy.

Authors:  Hon Chan; C Seth Pearson; Cathleen M Green; Zhong Li; Jing Zhang; Georges Belfort; Alex Shekhtman; Hongmin Li; Marlene Belfort
Journal:  J Biol Chem       Date:  2016-09-08       Impact factor: 5.157

9.  Protein Splicing Activity of the Haloferax volcanii PolB-c Intein Is Sensitive to Homing Endonuclease Domain Mutations.

Authors:  Shachar Robinzon; Alexandra R Cawood; Mercedes A Ruiz; Uri Gophna; Neta Altman-Price; Kenneth V Mills
Journal:  Biochemistry       Date:  2020-09-02       Impact factor: 3.162

10.  Dynamics differentiate between active and inactive inteins.

Authors:  Melissa Cronin; Michael J Coolbaugh; David Nellis; Jianwei Zhu; David W Wood; Ruth Nussinov; Buyong Ma
Journal:  Eur J Med Chem       Date:  2014-07-27       Impact factor: 6.514

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.