Literature DB >> 24634716

Inteins: Nature's Gift to Protein Chemists.

Neel H Shah1, Tom W Muir1.   

Abstract

Inteins are auto-processing domains found in organisms from all domains of life. These proteins carry out a process known as protein splicing, which is a multi-step biochemical reaction comprised of both the cleavage and formation of peptide bonds. While the endogenous substrates of protein splicing are specific essential proteins found in intein-containing host organisms, inteins are also functional in exogenous contexts and can be used to chemically manipulate virtually any polypeptide backbone. Given this, protein chemists have exploited various facets of intein reactivity to modify proteins in myriad ways for both basic biological research as well as potential therapeutic applications. Here, we review the intein field, first focusing on the biological context and phylogenetic diversity of inteins, followed by a description of intein structure and biochemical function. Finally, we discuss prevalent inteinbased technologies, focusing on their applications in chemical biology, followed by persistent caveats of intein chemistry and approaches to alleviate these shortcomings. The findings summarized herein describe two and a half decades of research, leading from a biochemical curiosity to the development of powerful protein engineering tools.

Entities:  

Year:  2014        PMID: 24634716      PMCID: PMC3949740          DOI: 10.1039/C3SC52951G

Source DB:  PubMed          Journal:  Chem Sci        ISSN: 2041-6520            Impact factor:   9.825


  105 in total

1.  Production of cyclic peptides and proteins in vivo.

Authors:  C P Scott; E Abel-Santos; M Wall; D C Wahnon; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Protein splicing in the absence of an intein penultimate histidine.

Authors:  L Chen; J Benner; F B Perler
Journal:  J Biol Chem       Date:  2000-07-07       Impact factor: 5.157

3.  Distribution and function of new bacterial intein-like protein domains.

Authors:  Gil Amitai; Olga Belenkiy; Bareket Dassa; Alla Shainskaya; Shmuel Pietrokovski
Journal:  Mol Microbiol       Date:  2003-01       Impact factor: 3.501

4.  Novel split intein for trans-splicing synthetic peptide onto C terminus of protein.

Authors:  Julia H Appleby; Kaisong Zhou; Gerrit Volkmann; Xiang-Qin Liu
Journal:  J Biol Chem       Date:  2009-01-09       Impact factor: 5.157

Review 5.  Recent progress in intein research: from mechanism to directed evolution and applications.

Authors:  Gerrit Volkmann; Henning D Mootz
Journal:  Cell Mol Life Sci       Date:  2012-08-28       Impact factor: 9.261

6.  A conserved threonine spring-loads precursor for intein splicing.

Authors:  Albert K Dearden; Brian Callahan; Patrick Van Roey; Zhong Li; Utsav Kumar; Marlene Belfort; Saroj K Nayak
Journal:  Protein Sci       Date:  2013-03-26       Impact factor: 6.725

7.  The Thermococcus kodakaraensis Tko CDC21-1 intein activates its N-terminal splice junction in the absence of a conserved histidine by a compensatory mechanism.

Authors:  Kazuo Tori; Manoj Cheriyan; Chandra Sekhar Pedamallu; Marleny A Contreras; Francine B Perler
Journal:  Biochemistry       Date:  2012-03-13       Impact factor: 3.162

8.  Biological applications of protein splicing.

Authors:  Miquel Vila-Perelló; Tom W Muir
Journal:  Cell       Date:  2010-10-15       Impact factor: 41.582

9.  Expressed protein ligation: a general method for protein engineering.

Authors:  T W Muir; D Sondhi; P A Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

10.  NMR and crystal structures of the Pyrococcus horikoshii RadA intein guide a strategy for engineering a highly efficient and promiscuous intein.

Authors:  Jesper S Oeemig; Dongwen Zhou; Tommi Kajander; Alexander Wlodawer; Hideo Iwaï
Journal:  J Mol Biol       Date:  2012-05-02       Impact factor: 5.469

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  96 in total

1.  Semisynthetic protein nanoreactor for single-molecule chemistry.

Authors:  Joongoo Lee; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

2.  Emerging Chemistry Strategies for Engineering Native Chromatin.

Authors:  Yael David; Tom W Muir
Journal:  J Am Chem Soc       Date:  2017-06-27       Impact factor: 15.419

3.  Efficient Generation of Hydrazides in Proteins by RadA Split Intein.

Authors:  Jun Liu; Oshini Ekanayake; Dominic Santoleri; Kelsi Walker; Sharon Rozovsky
Journal:  Chembiochem       Date:  2019-10-11       Impact factor: 3.164

4.  A mesophilic cysteine-less split intein for protein trans-splicing applications under oxidizing conditions.

Authors:  Maniraj Bhagawati; Tobias M E Terhorst; Friederike Füsser; Simon Hoffmann; Tim Pasch; Shmuel Pietrokovski; Henning D Mootz
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-14       Impact factor: 11.205

Review 5.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

Review 6.  Approach for in vivo delivery of CRISPR/Cas system: a recent update and future prospect.

Authors:  Yu-Fan Chuang; Andrew J Phipps; Fan-Li Lin; Valerie Hecht; Alex W Hewitt; Peng-Yuan Wang; Guei-Sheung Liu
Journal:  Cell Mol Life Sci       Date:  2021-01-03       Impact factor: 9.261

7.  A promiscuous split intein with expanded protein engineering applications.

Authors:  Adam J Stevens; Giridhar Sekar; Neel H Shah; Anahita Z Mostafavi; David Cowburn; Tom W Muir
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

Review 8.  CRISPR-Based Therapeutic Genome Editing: Strategies and In Vivo Delivery by AAV Vectors.

Authors:  Dan Wang; Feng Zhang; Guangping Gao
Journal:  Cell       Date:  2020-04-02       Impact factor: 41.582

9.  Structure of an engineered intein reveals thiazoline ring and provides mechanistic insight.

Authors:  C Seth Pearson; Reza Nemati; Binbin Liu; Jing Zhang; Matteo Scalabrin; Zhong Li; Hongmin Li; Dan Fabris; Marlene Belfort; Georges Belfort
Journal:  Biotechnol Bioeng       Date:  2019-01-08       Impact factor: 4.530

Review 10.  Modular protein domains: an engineering approach toward functional biomaterials.

Authors:  Charng-Yu Lin; Julie C Liu
Journal:  Curr Opin Biotechnol       Date:  2016-03-09       Impact factor: 9.740

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