Literature DB >> 20683475

A preoccupied position on nucleosomes.

B Franklin Pugh.   

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Year:  2010        PMID： 20683475     DOI： 10.1038/nsmb0810-923

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  5 in total

1.  Nucleosome sequence preferences influence in vivo nucleosome organization.

Authors:  Noam Kaplan; Irene Moore; Yvonne Fondufe-Mittendorf; Andrea J Gossett; Desiree Tillo; Yair Field; Timothy R Hughes; Jason D Lieb; Jonathan Widom; Eran Segal
Journal:  Nat Struct Mol Biol       Date:  2010-08       Impact factor: 15.369

2.  A genomic code for nucleosome positioning.

Authors:  Eran Segal; Yvonne Fondufe-Mittendorf; Lingyi Chen; AnnChristine Thåström; Yair Field; Irene K Moore; Ji-Ping Z Wang; Jonathan Widom
Journal:  Nature       Date:  2006-07-19       Impact factor: 49.962

3.  Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Authors:  Istvan Albert; Travis N Mavrich; Lynn P Tomsho; Ji Qi; Sara J Zanton; Stephan C Schuster; B Franklin Pugh
Journal:  Nature       Date:  2007-03-29       Impact factor: 49.962

4.  The DNA-encoded nucleosome organization of a eukaryotic genome.

Authors:  Noam Kaplan; Irene K Moore; Yvonne Fondufe-Mittendorf; Andrea J Gossett; Desiree Tillo; Yair Field; Emily M LeProust; Timothy R Hughes; Jason D Lieb; Jonathan Widom; Eran Segal
Journal:  Nature       Date:  2008-12-17       Impact factor: 49.962

5.  Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.

Authors:  Yong Zhang; Zarmik Moqtaderi; Barbara P Rattner; Ghia Euskirchen; Michael Snyder; James T Kadonaga; X Shirley Liu; Kevin Struhl
Journal:  Nat Struct Mol Biol       Date:  2009-07-20       Impact factor: 15.369
  5 in total
  20 in total

Review 1.  Perfect and imperfect nucleosome positioning in yeast.

Authors:  Hope A Cole; V Nagarajavel; David J Clark
Journal:  Biochim Biophys Acta       Date:  2012-01-28

Review 2.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

Review 3.  Nucleosome positioning in Saccharomyces cerevisiae.

Authors:  An Jansen; Kevin J Verstrepen
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

Review 4.  Nucleosome positioning: bringing order to the eukaryotic genome.

Authors:  Vishwanath R Iyer
Journal:  Trends Cell Biol       Date:  2012-03-14       Impact factor: 20.808

5.  Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy.

Authors:  Thijn van der Heijden; Joke J F A van Vugt; Colin Logie; John van Noort
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

6.  Noncoding Transcription Is a Driving Force for Nucleosome Instability in spt16 Mutant Cells.

Authors:  Jianxun Feng; Haiyun Gan; Matthew L Eaton; Hui Zhou; Shuqi Li; Jason A Belsky; David M MacAlpine; Zhiguo Zhang; Qing Li
Journal:  Mol Cell Biol       Date:  2016-06-15       Impact factor: 4.272

7.  Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.

Authors:  Jason M Rizzo; Jonathan E Bard; Michael J Buck
Journal:  BMC Mol Biol       Date:  2012-05-06       Impact factor: 2.946

8.  DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types.

Authors:  Deborah R Winter; Lingyun Song; Sayan Mukherjee; Terrence S Furey; Gregory E Crawford
Journal:  Genome Res       Date:  2013-05-08       Impact factor: 9.043

9.  CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters.

Authors:  Romain Fenouil; Pierre Cauchy; Frederic Koch; Nicolas Descostes; Joaquin Zacarias Cabeza; Charlène Innocenti; Pierre Ferrier; Salvatore Spicuglia; Marta Gut; Ivo Gut; Jean-Christophe Andrau
Journal:  Genome Res       Date:  2012-10-25       Impact factor: 9.043

10.  DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes.

Authors:  Varodom Charoensawan; Sarath Chandra Janga; Martha L Bulyk; M Madan Babu; Sarah A Teichmann
Journal:  Mol Cell       Date:  2012-07-27       Impact factor: 17.970
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