Literature DB >> 19703438

Histone H3 lysine 4 (H3K4) methylation in development and differentiation.

Joel C Eissenberg1, Ali Shilatifard.   

Abstract

Covalent modification of histones on chromatin is a dynamic mechanism by which various nuclear processes are regulated. Methylation of histone H3 on lysine 4 (H3K4) implemented by the macromolecular complex COMPASS and its related complexes is associated with transcriptionally active regions of chromatin. Enzymes that catalyze H3K4 methylation were initially characterized genetically as regulators of Hox loci, long before their catalytic functions were recognized. Since their discovery, genetic and biochemical studies of H3K4 methylases and demethylases have provided important mechanistic insight into the role of H3K4 methylation in HOX gene regulation during development. Copyright 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID： 19703438      PMCID： PMC3711867          DOI： 10.1016/j.ydbio.2009.08.017

Source DB:  PubMed          Journal:  Dev Biol        ISSN： 0012-1606            Impact factor:   3.582


  120 in total

1.  Histone lysine demethylases and their impact on epigenetics.

Authors:  Patrick Trojer; Danny Reinberg
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

2.  A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

Authors:  Bradley E Bernstein; Tarjei S Mikkelsen; Xiaohui Xie; Michael Kamal; Dana J Huebert; James Cuff; Ben Fry; Alex Meissner; Marius Wernig; Kathrin Plath; Rudolf Jaenisch; Alexandre Wagschal; Robert Feil; Stuart L Schreiber; Eric S Lander
Journal:  Cell       Date:  2006-04-21       Impact factor: 41.582

Review 3.  Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression.

Authors:  Ali Shilatifard
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

4.  Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II.

Authors:  Rushad Pavri; Bing Zhu; Guohong Li; Patrick Trojer; Subhrangsu Mandal; Ali Shilatifard; Danny Reinberg
Journal:  Cell       Date:  2006-05-19       Impact factor: 41.582

5.  Double chromodomains cooperate to recognize the methylated histone H3 tail.

Authors:  John F Flanagan; Li-Zhi Mi; Maksymilian Chruszcz; Marcin Cymborowski; Katrina L Clines; Youngchang Kim; Wladek Minor; Fraydoon Rastinejad; Sepideh Khorasanizadeh
Journal:  Nature       Date:  2005-12-22       Impact factor: 49.962

6.  Identification of the MLL2 complex as a coactivator for estrogen receptor alpha.

Authors:  Rigen Mo; Sambasiva M Rao; Yi-Jun Zhu
Journal:  J Biol Chem       Date:  2006-04-07       Impact factor: 5.157

7.  Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains.

Authors:  Robert J Sims; Chi-Fu Chen; Helena Santos-Rosa; Tony Kouzarides; Smita S Patel; Danny Reinberg
Journal:  J Biol Chem       Date:  2005-10-31       Impact factor: 5.157

8.  Histone and DNA methylation defects at Hox genes in mice expressing a SET domain-truncated form of Mll.

Authors:  Rémi Terranova; Hanane Agherbi; Annie Boned; Stéphane Meresse; Malek Djabali
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-17       Impact factor: 11.205

9.  Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax.

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Journal:  Science       Date:  2006-02-24       Impact factor: 47.728

10.  Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development.

Authors:  Stefan Glaser; Julia Schaft; Sandra Lubitz; Kristina Vintersten; Frank van der Hoeven; Katharina R Tufteland; Rein Aasland; Konstantinos Anastassiadis; Siew-Lan Ang; A Francis Stewart
Journal:  Development       Date:  2006-03-15       Impact factor: 6.868
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  153 in total

Review 1.  The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis.

Authors:  Ali Shilatifard
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

2.  The JmjN domain of Jhd2 is important for its protein stability, and the plant homeodomain (PHD) finger mediates its chromatin association independent of H3K4 methylation.

Authors:  Fu Huang; Mahesh B Chandrasekharan; Yi-Chun Chen; Srividya Bhaskara; Scott W Hiebert; Zu-Wen Sun
Journal:  J Biol Chem       Date:  2010-06-09       Impact factor: 5.157

3.  Structural analysis of the core COMPASS family of histone H3K4 methylases from yeast to human.

Authors:  Yoh-hei Takahashi; Gerwin H Westfield; Austin N Oleskie; Raymond C Trievel; Ali Shilatifard; Georgios Skiniotis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-07       Impact factor: 11.205

Review 4.  Trithorax group proteins: switching genes on and keeping them active.

Authors:  Bernd Schuettengruber; Anne-Marie Martinez; Nicola Iovino; Giacomo Cavalli
Journal:  Nat Rev Mol Cell Biol       Date:  2011-11-23       Impact factor: 94.444

5.  Licensed to elongate: a molecular mechanism for MLL-based leukaemogenesis.

Authors:  Man Mohan; Chengqi Lin; Erin Guest; Ali Shilatifard
Journal:  Nat Rev Cancer       Date:  2010-09-16       Impact factor: 60.716

Review 6.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

7.  Neuronal Kmt2a/Mll1 histone methyltransferase is essential for prefrontal synaptic plasticity and working memory.

Authors:  Mira Jakovcevski; Hongyu Ruan; Erica Y Shen; Aslihan Dincer; Behnam Javidfar; Qi Ma; Cyril J Peter; Iris Cheung; Amanda C Mitchell; Yan Jiang; Cong L Lin; Venu Pothula; A Francis Stewart; Patricia Ernst; Wei-Dong Yao; Schahram Akbarian
Journal:  J Neurosci       Date:  2015-04-01       Impact factor: 6.167

8.  Differential epigenetic effects of chlorpyrifos and arsenic in proliferating and differentiating human neural progenitor cells.

Authors:  Hee Yeon Kim; Susanna H Wegner; Kirk P Van Ness; Julie Juyoung Park; Sara E Pacheco; Tomomi Workman; Sungwoo Hong; William Griffith; Elaine M Faustman
Journal:  Reprod Toxicol       Date:  2016-08-11       Impact factor: 3.143

9.  CHD7 regulates cardiovascular development through ATP-dependent and -independent activities.

Authors:  Shun Yan; Rassarin Thienthanasit; Dongquan Chen; Erik Engelen; Joanna Brühl; David K Crossman; Robert Kesterson; Qin Wang; Karim Bouazoune; Kai Jiao
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-30       Impact factor: 11.205

10.  Human TNFα-induced protein 3-interacting protein 1 (TNIP1) promoter activation is regulated by retinoic acid receptors.

Authors:  Igor Gurevich; Carmen Zhang; Nidhish Francis; Charles P Struzynsky; Sarah E Livings; Brian J Aneskievich
Journal:  Gene       Date:  2012-12-08       Impact factor: 3.688
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