Literature DB >> 22708551

Evolutionary origin of RNA editing.

Michael W Gray1.   

Abstract

The term "RNA editing" encompasses a wide variety of mechanistically and phylogenetically unrelated processes that change the nucleotide sequence of an RNA species relative to that of the encoding DNA. Two general classes of editing, substitution and insertion/deletion, have been described, with all major types of cellular RNA (messenger, ribosomal, and transfer) undergoing editing in different organisms. In cases where RNA editing is required for function (e.g., to generate a translatable open reading frame in a mRNA), editing is an obligatory step in the pathway of genetic information expression. How, when, and why individual RNA editing systems originated are intriguing biochemical and evolutionary questions. Here I review briefly what is known about the biochemistry, genetics, and phylogenetics of several very different RNA editing systems, emphasizing what we can deduce about their origin and evolution from the molecular machinery involved. An evolutionary model, centered on the concept of "constructive neutral evolution", is able to account in a general way for the origin of RNA editing systems. The model posits that the biochemical elements of an RNA editing system must be in place before there is an actual need for editing, and that RNA editing systems are inherently mutagenic because they allow potentially deleterious or lethal mutations to persist at the genome level, whereas they would otherwise be purged by purifying selection.

Mesh:

Substances:

Year:  2012        PMID: 22708551     DOI: 10.1021/bi300419r

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  45 in total

1.  In search of beneficial coding RNA editing.

Authors:  Guixia Xu; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2014-11-12       Impact factor: 16.240

2.  Large-scale detection of in vivo transcription errors.

Authors:  Jean-François Gout; W Kelley Thomas; Zachary Smith; Kazufusa Okamoto; Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

Review 3.  High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Authors:  Sara L Zimmer; Rachel M Simpson; Laurie K Read
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-06-11       Impact factor: 9.957

4.  Human coding RNA editing is generally nonadaptive.

Authors:  Guixia Xu; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-24       Impact factor: 11.205

Review 5.  Parallel Evolution and Lineage-Specific Expansion of RNA Editing in Ctenophores.

Authors:  Andrea B Kohn; Rachel S Sanford; Masa-aki Yoshida; Leonid L Moroz
Journal:  Integr Comp Biol       Date:  2015-06-18       Impact factor: 3.326

6.  A-to-I RNA editing independent of ADARs in filamentous fungi.

Authors:  Chenfang Wang; Jin-Rong Xu; Huiquan Liu
Journal:  RNA Biol       Date:  2016-08-17       Impact factor: 4.652

7.  Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Authors:  Evgeny S Gerasimov; Anna A Gasparyan; Iosif Kaurov; Boris Tichý; Maria D Logacheva; Alexander A Kolesnikov; Julius Lukeš; Vyacheslav Yurchenko; Sara L Zimmer; Pavel Flegontov
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

8.  Unparalleled Variation in RNA Editing among Selaginella Plastomes.

Authors:  David Roy Smith
Journal:  Plant Physiol       Date:  2019-09-03       Impact factor: 8.340

Review 9.  U-Insertion/Deletion mRNA-Editing Holoenzyme: Definition in Sight.

Authors:  Inna Aphasizheva; Ruslan Aphasizhev
Journal:  Trends Parasitol       Date:  2015-11-10

10.  RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering.

Authors:  Xiaowen Shi; Arnaud Germain; Maureen R Hanson; Stéphane Bentolila
Journal:  Plant Physiol       Date:  2015-11-17       Impact factor: 8.340

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.