Literature DB >> 26578708

RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering.

Xiaowen Shi1, Arnaud Germain1, Maureen R Hanson2, Stéphane Bentolila1.   

Abstract

Plant RNA editosomes modify cytidines (C) to uridines (U) at specific sites in plastid and mitochondrial transcripts. Members of the RNA-editing factor interacting protein (RIP) family and Organelle RNA Recognition Motif-containing (ORRM) family are essential components of the Arabidopsis (Arabidopsis thaliana) editosome. ORRM2 and ORRM3 have been recently identified as minor mitochondrial editing factors whose silencing reduces editing efficiency at ∼6% of the mitochondrial C targets. Here we report the identification of ORRM4 (for organelle RRM protein 4) as a novel, major mitochondrial editing factor that controls ∼44% of the mitochondrial editing sites. C-to-U conversion is reduced, but not eliminated completely, at the affected sites. The orrm4 mutant exhibits slower growth and delayed flowering time. ORRM4 affects editing in a site-specific way, though orrm4 mutation affects editing of the entire transcript of certain genes. ORRM4 contains an RRM domain at the N terminus and a Gly-rich domain at the C terminus. The RRM domain provides the editing activity of ORRM4, whereas the Gly-rich domain is required for its interaction with ORRM3 and with itself. The presence of ORRM4 in the editosome is further supported by its interaction with RIP1 in a bimolecular fluorescence complementation assay. The identification of ORRM4 as a major mitochondrial editing factor further expands our knowledge of the composition of the RNA editosome and reveals that adequate mitochondrial editing is necessary for normal plant development.
© 2016 American Society of Plant Biologists. All Rights Reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26578708      PMCID: PMC4704580          DOI: 10.1104/pp.15.01280

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  65 in total

1.  A termination codon is created by RNA editing in the petunia atp9 transcript.

Authors:  H Wintz; M R Hanson
Journal:  Curr Genet       Date:  1991-01       Impact factor: 3.886

2.  RNA recognition: towards identifying determinants of specificity.

Authors:  D J Kenan; C C Query; J D Keene
Journal:  Trends Biochem Sci       Date:  1991-06       Impact factor: 13.807

3.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

4.  A conserved glutamate residue in the C-terminal deaminase domain of pentatricopeptide repeat proteins is required for RNA editing activity.

Authors:  Michael L Hayes; Kim N Dang; Michael F Diaz; R Michael Mulligan
Journal:  J Biol Chem       Date:  2015-03-04       Impact factor: 5.157

5.  RNA editing in plant mitochondria.

Authors:  R Hiesel; B Wissinger; W Schuster; A Brennicke
Journal:  Science       Date:  1989-12-22       Impact factor: 47.728

6.  Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana.

Authors:  Anja Zehrmann; Barbara Härtel; Franziska Glass; Eszter Bayer-Császár; Toshihiro Obata; Etienne Meyer; Axel Brennicke; Mizuki Takenaka
Journal:  J Biol Chem       Date:  2015-01-12       Impact factor: 5.157

7.  Cytidine deaminase motifs within the DYW domain of two pentatricopeptide repeat-containing proteins are required for site-specific chloroplast RNA editing.

Authors:  Jessica A Wagoner; Tao Sun; Lin Lin; Maureen R Hanson
Journal:  J Biol Chem       Date:  2014-12-15       Impact factor: 5.157

8.  RNA editing in wheat mitochondria results in the conservation of protein sequences.

Authors:  J M Gualberto; L Lamattina; G Bonnard; J H Weil; J M Grienenberger
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

9.  Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Authors:  Claire Lurin; Charles Andrés; Sébastien Aubourg; Mohammed Bellaoui; Frédérique Bitton; Clémence Bruyère; Michel Caboche; Cédrig Debast; José Gualberto; Beate Hoffmann; Alain Lecharny; Monique Le Ret; Marie-Laure Martin-Magniette; Hakim Mireau; Nemo Peeters; Jean-Pierre Renou; Boris Szurek; Ludivine Taconnat; Ian Small
Journal:  Plant Cell       Date:  2004-07-21       Impact factor: 11.277

10.  A zinc finger motif-containing protein is essential for chloroplast RNA editing.

Authors:  Tao Sun; Xiaowen Shi; Giulia Friso; Klaas Van Wijk; Stephane Bentolila; Maureen R Hanson
Journal:  PLoS Genet       Date:  2015-03-13       Impact factor: 5.917

View more
  22 in total

Review 1.  Molecular and Functional Diversity of RNA Editing in Plant Mitochondria.

Authors:  Wei Tang; Caroline Luo
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

2.  An Organelle RNA Recognition Motif Protein Is Required for Photosystem II Subunit psbF Transcript Editing.

Authors:  Justin B Hackett; Xiaowen Shi; Amy T Kobylarz; Meriah K Lucas; Ryan L Wessendorf; Kevin M Hines; Stephane Bentolila; Maureen R Hanson; Yan Lu
Journal:  Plant Physiol       Date:  2017-02-17       Impact factor: 8.340

3.  Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria.

Authors:  Damien Guillaumot; Mauricio Lopez-Obando; Kevin Baudry; Alexandra Avon; Guillem Rigaill; Andéol Falcon de Longevialle; Benjamin Broche; Mizuki Takenaka; Richard Berthomé; Geert De Jaeger; Etienne Delannoy; Claire Lurin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

4.  The RNA Editing Factor SlORRM4 Is Required for Normal Fruit Ripening in Tomato.

Authors:  Yongfang Yang; Guoning Zhu; Rui Li; Shijie Yan; Daqi Fu; Benzhong Zhu; Huiqin Tian; Yunbo Luo; Hongliang Zhu
Journal:  Plant Physiol       Date:  2017-10-23       Impact factor: 8.340

5.  Whole-transcriptome RNA-seq, gene set enrichment pathway analysis, and exon coverage analysis of two plastid RNA editing mutants.

Authors:  Justin B Hackett; Yan Lu
Journal:  Plant Signal Behav       Date:  2017-04-07

6.  Targeted base editing in the mitochondrial genome of Arabidopsis thaliana.

Authors:  Issei Nakazato; Miki Okuno; Chang Zhou; Takehiko Itoh; Nobuhiro Tsutsumi; Mizuki Takenaka; Shin-Ichi Arimura
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-13       Impact factor: 12.779

7.  OsGRP3 Enhances Drought Resistance by Altering Phenylpropanoid Biosynthesis Pathway in Rice (Oryza sativa L.).

Authors:  Wuwu Xu; Yangfan Dou; Han Geng; Jinmei Fu; Zhiwu Dan; Ting Liang; Mingxing Cheng; Weibo Zhao; Yafei Zeng; Zhongli Hu; Wenchao Huang
Journal:  Int J Mol Sci       Date:  2022-06-24       Impact factor: 6.208

8.  DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum (Sorghum bicolor): genome-wide identification, characterization and expression profiles under cadmium and salt stresses.

Authors:  M Aydın Akbudak; Ertugrul Filiz; Kubra Kontbay
Journal:  3 Biotech       Date:  2018-09-28       Impact factor: 2.406

9.  Organelle RNA recognition motif-containing (ORRM) proteins are plastid and mitochondrial editing factors in Arabidopsis.

Authors:  Xiaowen Shi; Stephane Bentolila; Maureen R Hanson
Journal:  Plant Signal Behav       Date:  2016-05-03

Review 10.  Roles of Plant Glycine-Rich RNA-Binding Proteins in Development and Stress Responses.

Authors:  Liqun Ma; Ke Cheng; Jinyan Li; Zhiqi Deng; Chunjiao Zhang; Hongliang Zhu
Journal:  Int J Mol Sci       Date:  2021-05-29       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.