Literature DB >> 27533598

A-to-I RNA editing independent of ADARs in filamentous fungi.

Chenfang Wang1,2, Jin-Rong Xu2, Huiquan Liu1.   

Abstract

ADAR mediated A-to-I RNA editing is thought to be unique to animals and occurs mainly in the non-coding regions. Recently filamentous fungi such as Fusarium graminearum were found to lack orthologs of animal ADARs but have stage-specific A-to-I editing during sexual reproduction. Unlike animals, majority of editing sites are in the coding regions and often result in missense and stop loss changes in fungi. Furthermore, whereas As in RNA stems are targeted by animal ADARs, RNA editing in fungi preferentially targets As in hairpin loops, implying that fungal RNA editing involves mechanisms related to editing of the anticodon loop by ADATs. Identification and characterization of fungal adenosine deaminases and their stage-specific co-factors may be helpful to understand the evolution of human ADARs. Fungi also can be used to study biological functions of missense and stop loss RNA editing events in eukaryotic organisms.

Entities:  

Keywords:  Adenosine deaminases, Fusarium, Inosine, Neurospora, RNA editing

Year:  2016        PMID: 27533598      PMCID: PMC5056780          DOI: 10.1080/15476286.2016.1215796

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  39 in total

Review 1.  A-to-I RNA editing and human disease.

Authors:  Stefan Maas; Yukio Kawahara; Kristen M Tamburro; Kazuko Nishikura
Journal:  RNA Biol       Date:  2006-01-12       Impact factor: 4.652

Review 2.  Dimorphism in fungal plant pathogens.

Authors:  Marina Nadal; María D García-Pedrajas; Scott E Gold
Journal:  FEMS Microbiol Lett       Date:  2008-05-12       Impact factor: 2.742

Review 3.  ADAR proteins: double-stranded RNA and Z-DNA binding domains.

Authors:  Pierre Barraud; Frédéric H-T Allain
Journal:  Curr Top Microbiol Immunol       Date:  2012       Impact factor: 4.291

Review 4.  Pathocycles: Ustilago maydis as a model to study the relationships between cell cycle and virulence in pathogenic fungi.

Authors:  José Pérez-Martín; Sonia Castillo-Lluva; Cecilia Sgarlata; Ignacio Flor-Parra; Natalia Mielnichuk; Joaquín Torreblanca; Natalia Carbó
Journal:  Mol Genet Genomics       Date:  2006-07-29       Impact factor: 3.291

5.  Rearrangement of duplicated DNA in specialized cells of Neurospora.

Authors:  E U Selker; E B Cambareri; B C Jensen; K R Haack
Journal:  Cell       Date:  1987-12-04       Impact factor: 41.582

6.  Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology.

Authors:  Usha Rani Sikhakolli; Francesc López-Giráldez; Ning Li; Ralph Common; Jeffrey P Townsend; Frances Trail
Journal:  Fungal Genet Biol       Date:  2012-06-15       Impact factor: 3.495

Review 7.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

8.  SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNA-directed RNA polymerase.

Authors:  Patrick K T Shiu; Denise Zickler; Namboori B Raju; Gwenael Ruprich-Robert; Robert L Metzenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-06       Impact factor: 11.205

Review 9.  The ADAR protein family.

Authors:  Yiannis A Savva; Leila E Rieder; Robert A Reenan
Journal:  Genome Biol       Date:  2012-12-28       Impact factor: 13.583

10.  Predicting sites of ADAR editing in double-stranded RNA.

Authors:  Julie M Eggington; Tom Greene; Brenda L Bass
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

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  10 in total

1.  A-to-I RNA editing is developmentally regulated and generally adaptive for sexual reproduction in Neurospora crassa.

Authors:  Huiquan Liu; Yang Li; Daipeng Chen; Zhaomei Qi; Qinhu Wang; Jianhua Wang; Cong Jiang; Jin-Rong Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

Review 2.  Repeat-Induced Point Mutation and Other Genome Defense Mechanisms in Fungi.

Authors:  Eugene Gladyshev
Journal:  Microbiol Spectr       Date:  2017-07

3.  A survey on cellular RNA editing activity in response to Candida albicans infections.

Authors:  Yaowei Huang; Yingying Cao; Jiarui Li; Yuanhua Liu; Wu Zhong; Xuan Li; Chen Chen; Pei Hao
Journal:  BMC Genomics       Date:  2018-01-19       Impact factor: 3.969

Review 4.  ADAR RNA editing below the backbone.

Authors:  Liam Keegan; Anzer Khan; Dragana Vukic; Mary O'Connell
Journal:  RNA       Date:  2017-05-30       Impact factor: 4.942

5.  Identification and Analysis of RNA Editing Sites in the Chloroplast Transcripts of Aegilops tauschii L.

Authors:  Mengxing Wang; Hui Liu; Lingqiao Ge; Guangwei Xing; Meng Wang; Song Weining; Xiaojun Nie
Journal:  Genes (Basel)       Date:  2016-12-30       Impact factor: 4.096

Review 6.  A to I editing in disease is not fake news.

Authors:  Prajakta Bajad; Michael F Jantsch; Liam Keegan; Mary O'Connell
Journal:  RNA Biol       Date:  2017-03-27       Impact factor: 4.652

Review 7.  Adenosine to inosine mRNA editing in fungi and how it may relate to fungal pathogenesis.

Authors:  Ines Teichert
Journal:  PLoS Pathog       Date:  2018-09-27       Impact factor: 6.823

8.  FairBase: a comprehensive database of fungal A-to-I RNA editing.

Authors:  Jinding Liu; Dongbo Wang; Yinna Su; Kun Lang; Rongjing Duan; YuFeng Wu; Fei Ma; Shuiqing Huang
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

Review 9.  Multi-Substrate Specificity and the Evolutionary Basis for Interdependence in tRNA Editing and Methylation Enzymes.

Authors:  Sameer Dixit; Jeremy C Henderson; Juan D Alfonzo
Journal:  Front Genet       Date:  2019-02-14       Impact factor: 4.599

10.  Genome-Wide Identification and Characterization of RNA/DNA Differences Associated with Fusarium graminearum Infection in Wheat.

Authors:  Guang Yang; Yan Pan; Qinlong Zhao; Jiaqian Huang; Wenqiu Pan; Licao Cui; Weining Song; Therese Ouellet; Youlian Pan; Xiaojun Nie
Journal:  Int J Mol Sci       Date:  2022-07-20       Impact factor: 6.208

  10 in total

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