Literature DB >> 22677978

Kinetic analysis reveals successive steps leading to miRNA-mediated silencing in mammalian cells.

Julien Béthune1, Caroline G Artus-Revel, Witold Filipowicz.   

Abstract

MicroRNAs (miRNAs) regulate most cellular functions, acting by posttranscriptionally repressing numerous eukaryotic mRNAs. They lead to translational repression, deadenylation and degradation of their target mRNAs. Yet, the relative contributions of these effects are controversial and little is known about the sequence of events occurring during the miRNA-induced response. Using stable human cell lines expressing inducible reporters, we found that translational repression is the dominant effect of miRNAs on newly synthesized targets. This step is followed by mRNA deadenylation and decay, which is the dominant effect at steady state. Our findings have important implications for understanding the mechanism of silencing and reconcile seemingly contradictory data.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22677978      PMCID: PMC3410385          DOI: 10.1038/embor.2012.82

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  30 in total

1.  GW182 proteins directly recruit cytoplasmic deadenylase complexes to miRNA targets.

Authors:  Joerg E Braun; Eric Huntzinger; Maria Fauser; Elisa Izaurralde
Journal:  Mol Cell       Date:  2011-10-07       Impact factor: 17.970

2.  miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT.

Authors:  Marc R Fabian; Maja K Cieplak; Filipp Frank; Masahiro Morita; Jonathan Green; Tharan Srikumar; Bhushan Nagar; Tadashi Yamamoto; Brian Raught; Thomas F Duchaine; Nahum Sonenberg
Journal:  Nat Struct Mol Biol       Date:  2011-10-07       Impact factor: 15.369

Review 3.  Regulation of mRNA translation and stability by microRNAs.

Authors:  Marc Robert Fabian; Nahum Sonenberg; Witold Filipowicz
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 4.  microRNAs at the synapse.

Authors:  Gerhard Schratt
Journal:  Nat Rev Neurosci       Date:  2009-11-04       Impact factor: 34.870

5.  Reversible inhibition of PSD-95 mRNA translation by miR-125a, FMRP phosphorylation, and mGluR signaling.

Authors:  Ravi S Muddashetty; Vijayalaxmi C Nalavadi; Christina Gross; Xiaodi Yao; Lei Xing; Oskar Laur; Stephen T Warren; Gary J Bassell
Journal:  Mol Cell       Date:  2011-06-10       Impact factor: 17.970

Review 6.  A parsimonious model for gene regulation by miRNAs.

Authors:  Sergej Djuranovic; Ali Nahvi; Rachel Green
Journal:  Science       Date:  2011-02-04       Impact factor: 47.728

7.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

8.  Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation.

Authors:  Marc R Fabian; Géraldine Mathonnet; Thomas Sundermeier; Hansruedi Mathys; Jakob T Zipprich; Yuri V Svitkin; Fabiola Rivas; Martin Jinek; James Wohlschlegel; Jennifer A Doudna; Chyi-Ying A Chen; Ann-Bin Shyu; John R Yates; Gregory J Hannon; Witold Filipowicz; Thomas F Duchaine; Nahum Sonenberg
Journal:  Mol Cell       Date:  2009-08-27       Impact factor: 17.970

9.  miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs.

Authors:  Marina Chekulaeva; Hansruedi Mathys; Jakob T Zipprich; Jan Attig; Marija Colic; Roy Parker; Witold Filipowicz
Journal:  Nat Struct Mol Biol       Date:  2011-10-07       Impact factor: 15.369

10.  Ago-TNRC6 triggers microRNA-mediated decay by promoting two deadenylation steps.

Authors:  Chyi-Ying A Chen; Dinghai Zheng; Zhenfang Xia; Ann-Bin Shyu
Journal:  Nat Struct Mol Biol       Date:  2009-10-18       Impact factor: 15.369

View more
  105 in total

1.  Elucidating the temporal order of silencing.

Authors:  Elisa Izaurralde
Journal:  EMBO Rep       Date:  2012-06-22       Impact factor: 8.807

Review 2.  Argonaute proteins: functional insights and emerging roles.

Authors:  Gunter Meister
Journal:  Nat Rev Genet       Date:  2013-06-04       Impact factor: 53.242

Review 3.  Biogenesis, turnover, and mode of action of plant microRNAs.

Authors:  Kestrel Rogers; Xuemei Chen
Journal:  Plant Cell       Date:  2013-07-23       Impact factor: 11.277

4.  Trip to ER: MicroRNA-mediated translational repression in plants.

Authors:  Xuan Ma; Xiaofeng Cao; Beixin Mo; Xuemei Chen
Journal:  RNA Biol       Date:  2013-09-10       Impact factor: 4.652

Review 5.  RNA viruses and microRNAs: challenging discoveries for the 21st century.

Authors:  Gokul Swaminathan; Julio Martin-Garcia; Sonia Navas-Martin
Journal:  Physiol Genomics       Date:  2013-09-17       Impact factor: 3.107

6.  mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues.

Authors:  Stephen W Eichhorn; Huili Guo; Sean E McGeary; Ricard A Rodriguez-Mias; Chanseok Shin; Daehyun Baek; Shu-Hao Hsu; Kalpana Ghoshal; Judit Villén; David P Bartel
Journal:  Mol Cell       Date:  2014-09-25       Impact factor: 17.970

Review 7.  Towards a molecular understanding of microRNA-mediated gene silencing.

Authors:  Stefanie Jonas; Elisa Izaurralde
Journal:  Nat Rev Genet       Date:  2015-06-16       Impact factor: 53.242

Review 8.  Principles of miRNA-mRNA interactions: beyond sequence complementarity.

Authors:  Fabian Afonso-Grunz; Sören Müller
Journal:  Cell Mol Life Sci       Date:  2015-06-03       Impact factor: 9.261

9.  In vivo, Argonaute-bound microRNAs exist predominantly in a reservoir of low molecular weight complexes not associated with mRNA.

Authors:  Gaspare La Rocca; Scott H Olejniczak; Alvaro J González; Daniel Briskin; Joana A Vidigal; Lee Spraggon; Raymond G DeMatteo; Megan R Radler; Tullia Lindsten; Andrea Ventura; Thomas Tuschl; Christina S Leslie; Craig B Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-07       Impact factor: 11.205

10.  Transcriptome-wide stability analysis uncovers LARP4-mediated NFκB1 mRNA stabilization during T cell activation.

Authors:  Yi Tian; Zhouhao Zeng; Xiang Li; Yiyin Wang; Runsen Chen; Sandy Mattijssen; Sergei Gaidamakov; Yuzhang Wu; Richard J Maraia; Weiqun Peng; Jun Zhu
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.