Literature DB >> 19716330

Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation.

Marc R Fabian1, Géraldine Mathonnet, Thomas Sundermeier, Hansruedi Mathys, Jakob T Zipprich, Yuri V Svitkin, Fabiola Rivas, Martin Jinek, James Wohlschlegel, Jennifer A Doudna, Chyi-Ying A Chen, Ann-Bin Shyu, John R Yates, Gregory J Hannon, Witold Filipowicz, Thomas F Duchaine, Nahum Sonenberg.   

Abstract

MicroRNAs (miRNAs) inhibit mRNA expression in general by base pairing to the 3'UTR of target mRNAs and consequently inhibiting translation and/or initiating poly(A) tail deadenylation and mRNA destabilization. Here we examine the mechanism and kinetics of miRNA-mediated deadenylation in mouse Krebs-2 ascites extract. We demonstrate that miRNA-mediated mRNA deadenylation occurs subsequent to initial translational inhibition, indicating a two-step mechanism of miRNA action, which serves to consolidate repression. We show that a let-7 miRNA-loaded RNA-induced silencing complex (miRISC) interacts with the poly(A)-binding protein (PABP) and the CAF1 and CCR4 deadenylases. In addition, we demonstrate that miRNA-mediated deadenylation is dependent upon CAF1 activity and PABP, which serves as a bona fide miRNA coactivator. Importantly, we present evidence that GW182, a core component of the miRISC, directly interacts with PABP via its C-terminal region and that this interaction is required for miRNA-mediated deadenylation.

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Year:  2009        PMID: 19716330      PMCID: PMC2803087          DOI: 10.1016/j.molcel.2009.08.004

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  68 in total

1.  MicroRNAs direct rapid deadenylation of mRNA.

Authors:  Ligang Wu; Jihua Fan; Joel G Belasco
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-22       Impact factor: 11.205

2.  A mechanism of translational repression by competition of Paip2 with eIF4G for poly(A) binding protein (PABP) binding.

Authors:  Muhammad M Karim; Yuri V Svitkin; Avak Kahvejian; Gregory De Crescenzo; Mauro Costa-Mattioli; Nahum Sonenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-13       Impact factor: 11.205

3.  Recapitulation of short RNA-directed translational gene silencing in vitro.

Authors:  Bingbing Wang; Tara M Love; Matthew E Call; John G Doench; Carl D Novina
Journal:  Mol Cell       Date:  2006-05-19       Impact factor: 17.970

4.  Functional characterization of IRESes by an inhibitor of the RNA helicase eIF4A.

Authors:  Marie-Eve Bordeleau; Ayaka Mori; Monika Oberer; Lisa Lindqvist; Louisa S Chard; Tatsuo Higa; Graham J Belsham; Gerhard Wagner; Junichi Tanaka; Jerry Pelletier
Journal:  Nat Chem Biol       Date:  2006-03-12       Impact factor: 15.040

5.  The C-terminal domains of human TNRC6A, TNRC6B, and TNRC6C silence bound transcripts independently of Argonaute proteins.

Authors:  Daniela Lazzaretti; Isabelle Tournier; Elisa Izaurralde
Journal:  RNA       Date:  2009-04-21       Impact factor: 4.942

6.  Short RNAs repress translation after initiation in mammalian cells.

Authors:  Christian P Petersen; Marie-Eve Bordeleau; Jerry Pelletier; Phillip A Sharp
Journal:  Mol Cell       Date:  2006-02-17       Impact factor: 17.970

7.  Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.

Authors:  Antonio J Giraldez; Yuichiro Mishima; Jason Rihel; Russell J Grocock; Stijn Van Dongen; Kunio Inoue; Anton J Enright; Alexander F Schier
Journal:  Science       Date:  2006-02-16       Impact factor: 47.728

8.  Importance of the C-terminal domain of the human GW182 protein TNRC6C for translational repression.

Authors:  Jakob T Zipprich; Sankar Bhattacharyya; Hansruedi Mathys; Witold Filipowicz
Journal:  RNA       Date:  2009-03-20       Impact factor: 4.942

9.  Multiple independent domains of dGW182 function in miRNA-mediated repression in Drosophila.

Authors:  Marina Chekulaeva; Witold Filipowicz; Roy Parker
Journal:  RNA       Date:  2009-03-20       Impact factor: 4.942

10.  The RRM domain in GW182 proteins contributes to miRNA-mediated gene silencing.

Authors:  Ana Eulalio; Felix Tritschler; Regina Büttner; Oliver Weichenrieder; Elisa Izaurralde; Vincent Truffault
Journal:  Nucleic Acids Res       Date:  2009-03-18       Impact factor: 16.971

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  198 in total

1.  The decapping activator HPat a novel factor co-purifying with GW182 from Drosophila cells.

Authors:  Elisabeth Jäger; Silke Dorner
Journal:  RNA Biol       Date:  2010-05-14       Impact factor: 4.652

2.  Pervasive and cooperative deadenylation of 3'UTRs by embryonic microRNA families.

Authors:  Edlyn Wu; Caroline Thivierge; Mathieu Flamand; Geraldine Mathonnet; Ajay A Vashisht; James Wohlschlegel; Marc R Fabian; Nahum Sonenberg; Thomas F Duchaine
Journal:  Mol Cell       Date:  2010-11-24       Impact factor: 17.970

3.  Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish.

Authors:  Yuichiro Mishima; Akira Fukao; Tomoyoshi Kishimoto; Hiroshi Sakamoto; Toshinobu Fujiwara; Kunio Inoue
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

4.  miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT.

Authors:  Marc R Fabian; Maja K Cieplak; Filipp Frank; Masahiro Morita; Jonathan Green; Tharan Srikumar; Bhushan Nagar; Tadashi Yamamoto; Brian Raught; Thomas F Duchaine; Nahum Sonenberg
Journal:  Nat Struct Mol Biol       Date:  2011-10-07       Impact factor: 15.369

Review 5.  Translational control by changes in poly(A) tail length: recycling mRNAs.

Authors:  Laure Weill; Eulàlia Belloc; Felice-Alessio Bava; Raúl Méndez
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

Review 6.  The mechanics of miRNA-mediated gene silencing: a look under the hood of miRISC.

Authors:  Marc R Fabian; Nahum Sonenberg
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

7.  Nuclear import of cytoplasmic poly(A) binding protein restricts gene expression via hyperadenylation and nuclear retention of mRNA.

Authors:  G Renuka Kumar; Britt A Glaunsinger
Journal:  Mol Cell Biol       Date:  2010-09-07       Impact factor: 4.272

Review 8.  Mechanisms of translational regulation in synaptic plasticity.

Authors:  Wayne S Sossin; Jean-Claude Lacaille
Journal:  Curr Opin Neurobiol       Date:  2010-04-27       Impact factor: 6.627

9.  Dynamic Control of Dendritic mRNA Expression by CNOT7 Regulates Synaptic Efficacy and Higher Cognitive Function.

Authors:  Rhonda L McFleder; Fernanda Mansur; Joel D Richter
Journal:  Cell Rep       Date:  2017-07-18       Impact factor: 9.423

10.  hCAF1/CNOT7 regulates interferon signalling by targeting STAT1.

Authors:  Clément Chapat; Chloé Kolytcheff; Muriel Le Romancer; Didier Auboeuf; Pierre De La Grange; Kamel Chettab; Stéphanie Sentis; Laura Corbo
Journal:  EMBO J       Date:  2013-02-05       Impact factor: 11.598

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