Literature DB >> 22653729

High-resolution protein structure determination by serial femtosecond crystallography.

Sébastien Boutet1, Lukas Lomb, Garth J Williams, Thomas R M Barends, Andrew Aquila, R Bruce Doak, Uwe Weierstall, Daniel P DePonte, Jan Steinbrener, Robert L Shoeman, Marc Messerschmidt, Anton Barty, Thomas A White, Stephan Kassemeyer, Richard A Kirian, M Marvin Seibert, Paul A Montanez, Chris Kenney, Ryan Herbst, Philip Hart, Jack Pines, Gunther Haller, Sol M Gruner, Hugh T Philipp, Mark W Tate, Marianne Hromalik, Lucas J Koerner, Niels van Bakel, John Morse, Wilfred Ghonsalves, David Arnlund, Michael J Bogan, Carl Caleman, Raimund Fromme, Christina Y Hampton, Mark S Hunter, Linda C Johansson, Gergely Katona, Christopher Kupitz, Mengning Liang, Andrew V Martin, Karol Nass, Lars Redecke, Francesco Stellato, Nicusor Timneanu, Dingjie Wang, Nadia A Zatsepin, Donald Schafer, James Defever, Richard Neutze, Petra Fromme, John C H Spence, Henry N Chapman, Ilme Schlichting.   

Abstract

Structure determination of proteins and other macromolecules has historically required the growth of high-quality crystals sufficiently large to diffract x-rays efficiently while withstanding radiation damage. We applied serial femtosecond crystallography (SFX) using an x-ray free-electron laser (XFEL) to obtain high-resolution structural information from microcrystals (less than 1 micrometer by 1 micrometer by 3 micrometers) of the well-characterized model protein lysozyme. The agreement with synchrotron data demonstrates the immediate relevance of SFX for analyzing the structure of the large group of difficult-to-crystallize molecules.

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Year:  2012        PMID: 22653729      PMCID: PMC3788707          DOI: 10.1126/science.1217737

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  14 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

2.  In vivo protein crystallization opens new routes in structural biology.

Authors:  Rudolf Koopmann; Karolina Cupelli; Lars Redecke; Karol Nass; Daniel P Deponte; Thomas A White; Francesco Stellato; Dirk Rehders; Mengning Liang; Jakob Andreasson; Andrew Aquila; Sasa Bajt; Miriam Barthelmess; Anton Barty; Michael J Bogan; Christoph Bostedt; Sébastien Boutet; John D Bozek; Carl Caleman; Nicola Coppola; Jan Davidsson; R Bruce Doak; Tomas Ekeberg; Sascha W Epp; Benjamin Erk; Holger Fleckenstein; Lutz Foucar; Heinz Graafsma; Lars Gumprecht; Janos Hajdu; Christina Y Hampton; Andreas Hartmann; Robert Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; Mark S Hunter; Stephan Kassemeyer; Richard A Kirian; Lukas Lomb; Filipe R N C Maia; Nils Kimmel; Andrew V Martin; Marc Messerschmidt; Christian Reich; Daniel Rolles; Benedikt Rudek; Artem Rudenko; Ilme Schlichting; Joachim Schulz; M Marvin Seibert; Robert L Shoeman; Raymond G Sierra; Heike Soltau; Stephan Stern; Lothar Strüder; Nicusor Timneanu; Joachim Ullrich; Xiaoyu Wang; Georg Weidenspointner; Uwe Weierstall; Garth J Williams; Cornelia B Wunderer; Petra Fromme; John C H Spence; Thilo Stehle; Henry N Chapman; Christian Betzel; Michael Duszenko
Journal:  Nat Methods       Date:  2012-01-29       Impact factor: 28.547

3.  Triclinic lysozyme at 0.65 A resolution.

Authors:  Jiawei Wang; Miroslawa Dauter; Randy Alkire; Andrzej Joachimiak; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-11-16

4.  Structure of hen egg-white lysozyme. A three-dimensional Fourier synthesis at 2 Angstrom resolution.

Authors:  C C Blake; D F Koenig; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Nature       Date:  1965-05-22       Impact factor: 49.962

5.  Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements.

Authors:  Anton Barty; Carl Caleman; Andrew Aquila; Nicusor Timneanu; Lukas Lomb; Thomas A White; Jakob Andreasson; David Arnlund; Saša Bajt; Thomas R M Barends; Miriam Barthelmess; Michael J Bogan; Christoph Bostedt; John D Bozek; Ryan Coffee; Nicola Coppola; Jan Davidsson; Daniel P Deponte; R Bruce Doak; Tomas Ekeberg; Veit Elser; Sascha W Epp; Benjamin Erk; Holger Fleckenstein; Lutz Foucar; Petra Fromme; Heinz Graafsma; Lars Gumprecht; Janos Hajdu; Christina Y Hampton; Robert Hartmann; Andreas Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; Mark S Hunter; Linda Johansson; Stephan Kassemeyer; Nils Kimmel; Richard A Kirian; Mengning Liang; Filipe R N C Maia; Erik Malmerberg; Stefano Marchesini; Andrew V Martin; Karol Nass; Richard Neutze; Christian Reich; Daniel Rolles; Benedikt Rudek; Artem Rudenko; Howard Scott; Ilme Schlichting; Joachim Schulz; M Marvin Seibert; Robert L Shoeman; Raymond G Sierra; Heike Soltau; John C H Spence; Francesco Stellato; Stephan Stern; Lothar Strüder; Joachim Ullrich; X Wang; Georg Weidenspointner; Uwe Weierstall; Cornelia B Wunderer; Henry N Chapman
Journal:  Nat Photonics       Date:  2012       Impact factor: 38.771

6.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  The minimum crystal size needed for a complete diffraction data set.

Authors:  James M Holton; Kenneth A Frankel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Observation of decreased radiation damage at higher dose rates in room temperature protein crystallography.

Authors:  Robert J Southworth-Davies; Melissa A Medina; Ian Carmichael; Elspeth F Garman
Journal:  Structure       Date:  2007-12       Impact factor: 5.006

9.  Experimental determination of the radiation dose limit for cryocooled protein crystals.

Authors:  Robin Leslie Owen; Enrique Rudiño-Piñera; Elspeth F Garman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-20       Impact factor: 11.205

10.  Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser.

Authors:  Lukas Lomb; Thomas R M Barends; Stephan Kassemeyer; Andrew Aquila; Sascha W Epp; Benjamin Erk; Lutz Foucar; Robert Hartmann; Benedikt Rudek; Daniel Rolles; Artem Rudenko; Robert L Shoeman; Jakob Andreasson; Sasa Bajt; Miriam Barthelmess; Anton Barty; Michael J Bogan; Christoph Bostedt; John D Bozek; Carl Caleman; Ryan Coffee; Nicola Coppola; Daniel P Deponte; R Bruce Doak; Tomas Ekeberg; Holger Fleckenstein; Petra Fromme; Maike Gebhardt; Heinz Graafsma; Lars Gumprecht; Christina Y Hampton; Andreas Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; James M Holton; Mark S Hunter; Wolfgang Kabsch; Nils Kimmel; Richard A Kirian; Mengning Liang; Filipe R N C Maia; Anton Meinhart; Stefano Marchesini; Andrew V Martin; Karol Nass; Christian Reich; Joachim Schulz; M Marvin Seibert; Raymond Sierra; Heike Soltau; John C H Spence; Jan Steinbrener; Francesco Stellato; Stephan Stern; Nicusor Timneanu; Xiaoyu Wang; Georg Weidenspointner; Uwe Weierstall; Thomas A White; Cornelia Wunderer; Henry N Chapman; Joachim Ullrich; Lothar Strüder; Ilme Schlichting
Journal:  Phys Rev B Condens Matter Mater Phys       Date:  2011-12-01
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  283 in total

1.  Accurate determination of segmented X-ray detector geometry.

Authors:  Oleksandr Yefanov; Valerio Mariani; Cornelius Gati; Thomas A White; Henry N Chapman; Anton Barty
Journal:  Opt Express       Date:  2015-11-02       Impact factor: 3.894

2.  Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase.

Authors:  Izumi Ishigami; Ariel Lewis-Ballester; Austin Echelmeier; Gerrit Brehm; Nadia A Zatsepin; Thomas D Grant; Jesse D Coe; Stella Lisova; Garrett Nelson; Shangji Zhang; Zachary F Dobson; Sébastien Boutet; Raymond G Sierra; Alexander Batyuk; Petra Fromme; Raimund Fromme; John C H Spence; Alexandra Ros; Syun-Ru Yeh; Denis L Rousseau
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-11       Impact factor: 11.205

3.  Crystallization reports are the backbone of Acta Cryst. F, but do they have any spine?

Authors:  Janet Newman; Denis R Burton; Sofia Caria; Sebastien Desbois; Christine L Gee; Vincent J Fazio; Marc Kvansakul; Bevan Marshall; Grant Mills; Viviane Richter; Shane A Seabrook; Mingbo Wu; Thomas S Peat
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-06-30

Review 4.  Selective and differential optical spectroscopies in photosynthesis.

Authors:  Elmars Krausz
Journal:  Photosynth Res       Date:  2013-07-10       Impact factor: 3.573

5.  An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.

Authors:  Agata Butryn; Philipp S Simon; Pierre Aller; Philip Hinchliffe; Ramzi N Massad; Gabriel Leen; Catherine L Tooke; Isabel Bogacz; In-Sik Kim; Asmit Bhowmick; Aaron S Brewster; Nicholas E Devenish; Jürgen Brem; Jos J A G Kamps; Pauline A Lang; Patrick Rabe; Danny Axford; John H Beale; Bradley Davy; Ali Ebrahim; Julien Orlans; Selina L S Storm; Tiankun Zhou; Shigeki Owada; Rie Tanaka; Kensuke Tono; Gwyndaf Evans; Robin L Owen; Frances A Houle; Nicholas K Sauter; Christopher J Schofield; James Spencer; Vittal K Yachandra; Junko Yano; Jan F Kern; Allen M Orville
Journal:  Nat Commun       Date:  2021-07-22       Impact factor: 14.919

6.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

Review 7.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

8.  X-ray Emission Spectroscopy as an in Situ Diagnostic Tool for X-ray Crystallography of Metalloproteins Using an X-ray Free-Electron Laser.

Authors:  Thomas Fransson; Ruchira Chatterjee; Franklin D Fuller; Sheraz Gul; Clemens Weninger; Dimosthenis Sokaras; Thomas Kroll; Roberto Alonso-Mori; Uwe Bergmann; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Biochemistry       Date:  2018-06-28       Impact factor: 3.162

9.  Development of a full-length human protein production pipeline.

Authors:  Justin Saul; Brianne Petritis; Sujay Sau; Femina Rauf; Michael Gaskin; Benjamin Ober-Reynolds; Irina Mineyev; Mitch Magee; John Chaput; Ji Qiu; Joshua LaBaer
Journal:  Protein Sci       Date:  2014-06-02       Impact factor: 6.725

10.  L-Edge X-ray Absorption Spectroscopy of Dilute Systems Relevant to Metalloproteins Using an X-ray Free-Electron Laser.

Authors:  Rolf Mitzner; Jens Rehanek; Jan Kern; Sheraz Gul; Johan Hattne; Taketo Taguchi; Roberto Alonso-Mori; Rosalie Tran; Christian Weniger; Henning Schröder; Wilson Quevedo; Hartawan Laksmono; Raymond G Sierra; Guangye Han; Benedikt Lassalle-Kaiser; Sergey Koroidov; Katharina Kubicek; Simon Schreck; Kristjan Kunnus; Maria Brzhezinskaya; Alexander Firsov; Michael P Minitti; Joshua J Turner; Stefan Moeller; Nicholas K Sauter; Michael J Bogan; Dennis Nordlund; William F Schlotter; Johannes Messinger; Andrew Borovik; Simone Techert; Frank M F de Groot; Alexander Föhlisch; Alexei Erko; Uwe Bergmann; Vittal K Yachandra; Philippe Wernet; Junko Yano
Journal:  J Phys Chem Lett       Date:  2013-10-09       Impact factor: 6.475

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